From 2007.igem.org
********** MODEL NAME
Model of the Division PoPer of Edinburgh iGEM 2007 Team
********** MODEL NOTES
********** MODEL STATES
d/dt(TetR) = TetRexp * ForwardState(time) - TetRdeg * TetR
d/dt(CLambdaR) = CLambdaRexp * BackwardState(time)- CLambdaRdeg * CLambdaR
d/dt(YFP)= (1-(1/(1+exp(((-TetR*ModTet)+SPTet))))) * TetMaxPoPS * ForwardState(time)
+ (1-(1/(1+exp(((-CLambdaR*ModLambda)+SPCLambda)))))* TetMaxPoPS * BackwardState(time)
- YFPdeg * YFP
TetR(0) = 0
CLambdaR(0) = 0
YFP(0)=0
********** MODEL PARAMETERS
TetRexp = 0.0001
CLambdaRexp = 0.0001
TetRdeg = 0.05
CLambdaRdeg = 0.05
SPTet = 7
SPCLambda = 7
ModTet = 4500
ModLambda = 4500
TetMaxPoPS = 0.0001
CLambdaMaxPoPS = 0.0001
YFPdeg = 0.05
********** MODEL VARIABLES
********** MODEL REACTIONS
********** MODEL FUNCTIONS
********** MODEL EVENTS
********** MODEL MATLAB FUNCTIONS
function [result] = ForwardState(x)
FlippingTime=15;
DivisionTime=80;
temp=0;
temp = mod(x,2*DivisionTime+2*FlippingTime);
if temp < (DivisionTime)
result=1;
else result=0;
end
return
function [result] = BackwardState(x)
FlippingTime=15;
DivisionTime=80;
temp=0;
temp = mod(x,2*DivisionTime+2*FlippingTime);
if temp > (DivisionTime+FlippingTime)
if temp < (2*DivisionTime+FlippingTime)
result=1;
else result=0;
end
else result=0;
end
return