User:Macowell/Part Categories

From 2007.igem.org

Part Categories / Types

  • We could probably make our device categorization a better match to what teams are actually doing - we should be very sensitive to what they are doing device-wise during the part submission / acceptance screen and dynamically rework some of the categories.
  • TK: Three Top-Level divisions Input Devices, Output Devices, and Signal Processing Devices

Part-type documentation

  • Enough background and a clear enough definition of the type for teams to use the page essentially as a recipe for making more instantiations of that part of type, intentionally.

Part-type specific fields

Use this format:

Name of field : example entry
  • Protein coding regions - example [http://partsregistry.org/Part:BBa_I769106 BBa_I769106]
    • EC number : [http://www.chem.qmul.ac.uk/iubmb/enzyme/EC4/2/1/101.html 4.2.1.101]
    • Genbank Accession : [http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=40788116 AJ536325]
    • Genbank Accession Region : [http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=40788116&from=1994&to=2824&view=gbwithparts 1994..2824]
    • Genbank G.I. : [http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nuccore&id=40788116 40788116]
    • Swissprot / [http://www.ebi.uniprot.org/uniprot-srv/uniProtView.do?proteinId=Q70V03_PSEFL&pager.offset=null Uniprot] : [http://www.expasy.org/uniprot/Q70V03 Q70V03]
    • PDB Code : [http://www.rcsb.org/pdb/explore.do?structureId=2J5I 2J5I]
  • Reporters - example BBa_E0040
    • Genbank G.I. : 155662
    • Genbank Accession : M62654
    • Swissprot: P42212
    • PDB Code : 1B9C
    • Excitation wavelength : 501nm
    • Emission wavelength : 511nm