Glasgow/DryWeek1

From 2007.igem.org

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After a brief re-introduction to the Laboratory and our project proposal, we outlined a [[Glasgow/Phases| ******6-PHASE*********]] approach to guide our practice over the summer.
After a brief re-introduction to the Laboratory and our project proposal, we outlined a [[Glasgow/Phases| ******6-PHASE*********]] approach to guide our practice over the summer.
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From here the Modellers began working on basic Matlab modelling tutorials, designed by [[User:gux|Xu Gu]], to allow all modellers to reach a satisfactory ability. By the end of the day we had completed a number of [http://en.wikipedia.org/wiki/Law_of_mass_action Mass-action] programs using the ode45 funtion and grasped the translation from basic notaion into Substrate, Enzyme and S/E-complex notation.
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From here the Modellers began working on basic Matlab modelling tutorials, designed by [[User:gux|Xu Gu]], to allow all modellers to reach a satisfactory ability. By the end of the day we had completed a number of [http://en.wikipedia.org/wiki/Law_of_mass_action Mass-action] programs using the ode45 funtion and grasped the translation from basic notaion into [http://en.wikipedia.org/wiki/Substrate_%28biochemistry%29 Substrate], Enzyme and S/E-complex notation.
=== 03/07 ===
=== 03/07 ===

Revision as of 15:54, 27 September 2007

https://static.igem.org/mediawiki/2007/thumb/c/cc/Uog.jpg/50px-Uog.jpg Back To
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Drylab's Log

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Contents

Week 1

02/07

After a brief re-introduction to the Laboratory and our project proposal, we outlined a ******6-PHASE********* approach to guide our practice over the summer.

From here the Modellers began working on basic Matlab modelling tutorials, designed by Xu Gu, to allow all modellers to reach a satisfactory ability. By the end of the day we had completed a number of [http://en.wikipedia.org/wiki/Law_of_mass_action Mass-action] programs using the ode45 funtion and grasped the translation from basic notaion into [http://en.wikipedia.org/wiki/Substrate_%28biochemistry%29 Substrate], Enzyme and S/E-complex notation.

03/07

We developed our modelling techniques by programming responses to basic [http://en.wikipedia.org/wiki/Metabolic_pathway metabolic] and [http://en.wikipedia.org/wiki/Cell_signaling signalling] pathways. We then learnt more precise techniques of modelling, e.g. accuracy and tolerace variance and noting parameters. We then covered Loop and Switch functions.

04/07

We were introduced to the 'Nested Functions' to allow for simpler programming, and the basic ideas behind Sensitivity of output due to a range of possible values of varying constants.

In the afternoon, all modellers were shown some Wetlab techniques for the sake of a more thorough understanding of the processes involved.

Our experiment was to extract plasmids from a number of different bacterial cultures.

05/07

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Tutorials References Resources