Melbourne/Lab BL Notebook/PCR1

From 2007.igem.org

< Melbourne | Lab BL Notebook(Difference between revisions)
 
(13 intermediate revisions not shown)
Line 6: Line 6:
! PCR mix
! PCR mix
! PCR program
! PCR program
 +
! [[Melbourne/Lab_BL_Notebook/PrimersI|PrimerII]]
|-
|-
|5ul 10x buffer\\
|5ul 10x buffer\\
Line 15: Line 16:
2.5ul MgSO4 (Supplied in PCR kit)
2.5ul MgSO4 (Supplied in PCR kit)
-
1.5ul Primer I (10uM)
+
1.5ul Primer [[Melbourne/Lab_BL_Notebook/PrimersI#Oligo_15|BL_FP1_s]] (10uM stock)
-
1.5ul Primer II (10uM)
+
1.5ul Primer II (10uM stock)
1ul Template ([[Melbourne/pJS010|pJS010]])
1ul Template ([[Melbourne/pJS010|pJS010]])
Line 24: Line 25:
32.5ul ddH<sub>2</sub>O
32.5ul ddH<sub>2</sub>O
 +
 +
|94°C -  5'
 +
 +
94°C  - 30"
 +
 +
59°C  - 35"
 +
 +
68°C  - 1.5' (goto step 2 x30)
 +
 +
68°C  -10'
 +
 +
4°C forever
 +
 +
|Reaction A => Primer BL_Con1_as
 +
 +
Reaction B => Primer BL_Con2_as
 +
 +
Reaction C => Primer BL_Con3_as
 +
 +
Reaction D => Primer BL_Con4_as
 +
 +
Reaction E => Primer BL_Con5_as
 +
 +
Reaction F => Primer BL_Con6_as
 +
 +
Reaction G => Primer BL_Con7_as
|-
|-
-
| <code><nowiki><math>\sqrt{2}</math></nowiki></code>
+
 
-
| <math>\sqrt{2}</math>
+
-
| <code><nowiki>&amp;radic;2</nowiki></code>
+
-
| &radic;2
+
-
|-
+
| 50ul Total
| 50ul Total
-
| <math>\sqrt{1-e^2}</math>
 
-
| <code><nowiki>&amp;radic;(1&amp;minus;''e''&amp;sup2;)</nowiki></code>
 
-
| &radic;(1&minus;''e''&sup2;)
 
|}
|}
 +
=Protocol for PCR reactions 1-7=
 +
For amplification of the kinase domain of ComP
 +
 +
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; background: #f9f9f9; border: 1px #aaa solid; border-collapse: collapse;"
 +
|-
 +
! PCR mix
 +
! PCR program
 +
! [[Melbourne/Lab_BL_Notebook/PrimersI|PrimerI]]
|-
|-
-
====PCR mix====                                         
 
|5ul 10x buffer\\
|5ul 10x buffer\\
-
5ul Enhancer
 
0.6ul dNTPs (25mM stock)
0.6ul dNTPs (25mM stock)
Line 46: Line 72:
2.5ul MgSO4 (Supplied in PCR kit)
2.5ul MgSO4 (Supplied in PCR kit)
-
1.5ul Primer I (10uM)
+
1.5ul Primer I (10uM stock)
-
1.5ul Primer II (10uM)
+
1.5ul Primer VR (10uM stock)
1ul Template ([[Melbourne/pJS010|pJS010]])
1ul Template ([[Melbourne/pJS010|pJS010]])
Line 55: Line 81:
32.5ul ddH<sub>2</sub>O
32.5ul ddH<sub>2</sub>O
 +
|94°C -  5'
-
---
+
94°C  - 30"
-
50ul Total
+
59°C  - 35"
-
|
+
 
 +
68°C  - 1.5' (goto step 2 x30)
 +
 
 +
68°C  - 10'
 +
 
 +
4°C forever
 +
 
 +
|Reaction A => Primer BL_Con1_s
 +
 
 +
Reaction B => Primer BL_Con2_s
 +
 
 +
Reaction C => Primer BL_Con3_s
 +
 
 +
Reaction D => Primer BL_Con4_s
 +
 
 +
Reaction E => Primer BL_Con5_s
 +
 
 +
Reaction F => Primer BL_Con6_s
 +
 
 +
Reaction G => Primer BL_Con7_s
|-
|-
 +
 +
| 50ul Total
 +
|}

Latest revision as of 15:15, 10 October 2007

Protocol for PCR reactions A~G

For amplifying the photoreceptor and transmembrane domains of NpSopII-NpHtrII.

PCR mix PCR program PrimerII
5ul 10x buffer\\

5ul Enhancer

0.6ul dNTPs (25mM stock)

2.5ul MgSO4 (Supplied in PCR kit)

1.5ul Primer BL_FP1_s (10uM stock)

1.5ul Primer II (10uM stock)

1ul Template (pJS010)

0.4ul Pfx Platinum (Invitrogen)

32.5ul ddH2O

94°C - 5'

94°C - 30"

59°C - 35"

68°C - 1.5' (goto step 2 x30)

68°C -10'

4°C forever

Reaction A => Primer BL_Con1_as

Reaction B => Primer BL_Con2_as

Reaction C => Primer BL_Con3_as

Reaction D => Primer BL_Con4_as

Reaction E => Primer BL_Con5_as

Reaction F => Primer BL_Con6_as

Reaction G => Primer BL_Con7_as

50ul Total

Protocol for PCR reactions 1-7

For amplification of the kinase domain of ComP

PCR mix PCR program PrimerI
5ul 10x buffer\\


0.6ul dNTPs (25mM stock)

2.5ul MgSO4 (Supplied in PCR kit)

1.5ul Primer I (10uM stock)

1.5ul Primer VR (10uM stock)

1ul Template (pJS010)

0.4ul Pfx Platinum (Invitrogen)

32.5ul ddH2O

94°C - 5'

94°C - 30"

59°C - 35"

68°C - 1.5' (goto step 2 x30)

68°C - 10'

4°C forever

Reaction A => Primer BL_Con1_s

Reaction B => Primer BL_Con2_s

Reaction C => Primer BL_Con3_s

Reaction D => Primer BL_Con4_s

Reaction E => Primer BL_Con5_s

Reaction F => Primer BL_Con6_s

Reaction G => Primer BL_Con7_s

50ul Total
Retrieved from "http://2007.igem.org/wiki/index.php/Melbourne/Lab_BL_Notebook/PCR1"