Glasgow/DryReferences

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|[https://2007.igem.org/Glasgow/Modeling <font face=georgia color=#3366CC size=5><b>Modelling</b></font>]
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|[https://2007.igem.org/Glasgow/DryTutorials <font face=georgia color=#3366CC size=5><b>Tutorials</b></font>]
|[https://2007.igem.org/Glasgow/DryReferences <font face=georgia color=#3366CC size=5><b>References</b></font>]
|[https://2007.igem.org/Glasgow/DryReferences <font face=georgia color=#3366CC size=5><b>References</b></font>]
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David Gilbert, Monika Heiner and Sebastian Lehrack "A Unifying Framework for Modelling and Analysing Biochemical Pathways Using Petri Nets". In proceedings Computational Methods in Systems Biology CMSB 2007 (Computational Methods in Systems Biology), Springer-Verlag LNCS/LNBI Volume 4695, pp. 200-216., 2007. <br/>
+
References
-
D.T. Gillespie. Exact stochastic simulation of coupled chemical reactions.
+
 
-
The Journal of Physical Chemistry, 81(25):2340–2361, 1977. <br/>
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[1] Gordon A. Leonard Sen McSweeney Darcy Birse Irina A. Smirnova,
-
D.J. Wilkinson. Stochastic Modelling for System Biology. CRC Press, New
+
Cyril Dian and Peter Brzezinski. Development of a bacterial biosensor
 +
for nitrotoluenes: The crystal structure of the transcriptional regulator
 +
dntr. Journal of Molecular Biology, 340:405–418, 2004.
 +
 
 +
[2] Park CH Yang CH Jung KC, Rhee HS. Determination of the dissociation
 +
constants for recombinant c-myc, max, and dna complexes: the inhibitory
 +
effect of linoleic acid on the dna-binding step. Biochem Biophys Res
 +
Commun, 334(1):269–75, 2005.
 +
 
 +
[2] Jun Zhu and Stephen C. Winans. Autoinducer binding by the quorum-sensing regulator
 +
trar increases affinity for target promoters vitro and decreases trar turnover rates in whole
 +
cells. In Proc. Natl. Acad. Sci, pages 4832–4837, 1999.
 +
 
 +
[3] Koch AL Nath K. Protein degradation in escherichia coli. i. measurement
 +
of rapidly and slowly decaying components. J Biol Chem, 245(11):2889–
 +
900, 1970.
 +
 
 +
[4] Yunxia Q. O’Malley, Maher Y. Abdalla, Michael L. McCormick,
 +
Krzysztof J. Reszka, Gerene M. Denning, and Bradley E. Britigan. Subcellular
 +
localization of Pseudomonas pyocyanin cytotoxicity in human
 +
lung epithelial cells. Am J Physiol Lung Cell Mol Physiol, 284(2):L420–
 +
430, 2003.
 +
 
 +
[5] J. Parsons, B. Greenhagen, K. Shi, K. Calabrese, H. Robinson, and
 +
J. Ladner. Structural and functional analysis of the pyocyanin biosynthetic
 +
protein phzm from pseudomonas aeruginosa. Biochemistry, 2007.
 +
 
 +
[6] Winans SC Zhu J. Autoinducer binding by the quorum-sensing regulator
 +
trar increases affinity for target promoters in vitro and decreases trar
 +
turnover rates in whole cells. Proc Natl Acad Sci U S A, 96(9):4832–7,
 +
1999.
 +
 
 +
[7] David Gilbert, Monika Heiner and Sebastian Lehrack "A Unifying Framework for Modelling and Analysing Biochemical Pathways Using Petri Nets". In proceedings Computational Methods in Systems Biology CMSB 2007, Springer-Verlag LNCS/LNBI Volume 4695, pp. 200-216., 2007.  
 +
 
 +
[8] D.T. Gillespie. Exact stochastic simulation of coupled chemical reactions.
 +
The Journal of Physical Chemistry, 81(25):2340–2361, 1977.  
 +
 
 +
[9] D.J. Wilkinson. Stochastic Modelling for System Biology. CRC Press, New
York, 1st Edition, 2006.
York, 1st Edition, 2006.
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|[https://2007.igem.org/Glasgow/Modeling <font face=georgia color=#99CCFF size=5><b>Modelling</b></font>]
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|[https://2007.igem.org/Glasgow/Modeling <font face=georgia color=#3366CC size=5><b>Modelling</b></font>]
|[https://2007.igem.org/Glasgow/DryLog <font face=georgia color=#3366CC  size=5><b>Log</b></font>]
|[https://2007.igem.org/Glasgow/DryLog <font face=georgia color=#3366CC  size=5><b>Log</b></font>]
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|[https://2007.igem.org/Glasgow/DryTutorials <font face=georgia color=#99CCFF size=5><b>Tutorials</b></font>]
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|[https://2007.igem.org/Glasgow/DryTutorials <font face=georgia color=#3366CC size=5><b>Tutorials</b></font>]
|[https://2007.igem.org/Glasgow/DryReferences <font face=georgia color=#3366CC size=5><b>References</b></font>]
|[https://2007.igem.org/Glasgow/DryReferences <font face=georgia color=#3366CC size=5><b>References</b></font>]
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Latest revision as of 19:34, 25 October 2007

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References

[1] Gordon A. Leonard Sen McSweeney Darcy Birse Irina A. Smirnova, Cyril Dian and Peter Brzezinski. Development of a bacterial biosensor for nitrotoluenes: The crystal structure of the transcriptional regulator dntr. Journal of Molecular Biology, 340:405–418, 2004.

[2] Park CH Yang CH Jung KC, Rhee HS. Determination of the dissociation constants for recombinant c-myc, max, and dna complexes: the inhibitory effect of linoleic acid on the dna-binding step. Biochem Biophys Res Commun, 334(1):269–75, 2005.

[2] Jun Zhu and Stephen C. Winans. Autoinducer binding by the quorum-sensing regulator trar increases affinity for target promoters vitro and decreases trar turnover rates in whole cells. In Proc. Natl. Acad. Sci, pages 4832–4837, 1999.

[3] Koch AL Nath K. Protein degradation in escherichia coli. i. measurement of rapidly and slowly decaying components. J Biol Chem, 245(11):2889– 900, 1970.

[4] Yunxia Q. O’Malley, Maher Y. Abdalla, Michael L. McCormick, Krzysztof J. Reszka, Gerene M. Denning, and Bradley E. Britigan. Subcellular localization of Pseudomonas pyocyanin cytotoxicity in human lung epithelial cells. Am J Physiol Lung Cell Mol Physiol, 284(2):L420– 430, 2003.

[5] J. Parsons, B. Greenhagen, K. Shi, K. Calabrese, H. Robinson, and J. Ladner. Structural and functional analysis of the pyocyanin biosynthetic protein phzm from pseudomonas aeruginosa. Biochemistry, 2007.

[6] Winans SC Zhu J. Autoinducer binding by the quorum-sensing regulator trar increases affinity for target promoters in vitro and decreases trar turnover rates in whole cells. Proc Natl Acad Sci U S A, 96(9):4832–7, 1999.

[7] David Gilbert, Monika Heiner and Sebastian Lehrack "A Unifying Framework for Modelling and Analysing Biochemical Pathways Using Petri Nets". In proceedings Computational Methods in Systems Biology CMSB 2007, Springer-Verlag LNCS/LNBI Volume 4695, pp. 200-216., 2007.

[8] D.T. Gillespie. Exact stochastic simulation of coupled chemical reactions. The Journal of Physical Chemistry, 81(25):2340–2361, 1977.

[9] D.J. Wilkinson. Stochastic Modelling for System Biology. CRC Press, New York, 1st Edition, 2006.

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