Glasgow/Wetlab/Resources

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[[Glasgow|Glasgow Main Page]] | [[Glasgow/Wetlab|Back To Wetlab Log]]
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!align=center|[[Image:Uog.jpg]] ||  [[Glasgow|<font face=georgia color=#3366CC size=4>Back To <br> Glasgow's <br> Main Page</font>]] || [[Glasgow/Wetlab|<font face=georgia color=#3366CC size=4>Back To <br> Glasgow's <br> Wetlab Log</font>]]||
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=== Resources ===
=== Resources ===
Some resources we have found useful in our research.
Some resources we have found useful in our research.
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!width="180" | [http://frodo.wi.mit.edu/ Primer3] | Checking primer design.
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!width="180" |[http://www.mbio.ncsu.edu/BioEdit/bioedit.html <font face=georgia color=#3366CC size=4>BioEdit</font>]
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|| Biological sequence alignment editor
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!width="180" |[http://www.iit-biotech.de/iit-cgi/oligo-tm.pl Primer Melting Temperatures] ||
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!width="180" |[http://www.ncbi.nlm.nih.gov/BLAST/ <font face=georgia color=#3366CC size=4>BLAST</font>]
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||Compares nucleotide or protein sequences to sequence databases and calculates the statistical significance of matches.
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|- align="left"
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!width="180 |[http://www.ncbi.nlm.nih.gov/ <font face=georgia color=#3366CC size=4>NCBI</font>]
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||National Center fot Biotechnology Information.
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!width="180 |[http://openwetware.org/wiki/Main_Page <font face=georgia color=#3366CC size=4>Open Wetware</font>]
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||DNA sequence analysis.
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!width="180 |[http://www.acaclone.com/ <font face=georgia color=#3366CC size=4>pDRAW32</font>]
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||DNA sequence analysis.
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|- align="left"
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!width="180" | [http://fokker.wi.mit.edu/primer3/input.htm  <font face=georgia color=#3366CC size=4>Primer3</font>]
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|| Checking primer design.
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|- align="left"
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!width="180" | [http://www.iit-biotech.de/iit-cgi/oligo-tm.pl <font face=georgia color=#3366CC size=4>Primer Melting Temperatures</font>]
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|| Calculating primer melting temperatures for DNA sequencing.
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|- align="left"
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!width="180 |[http://rna.lundberg.gu.se/cutter2/ <font face=georgia color=#3366CC size=4>Webcutter 2.0</font>]
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||Restriction mapping.
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|}
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=== Plasmids ===
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Diagrams of the sequences from which we made our parts.
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|- align="left"
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!width="180" |<font face=georgia color=#3366CC size=4>XylR, pu and pr inpGLTUR</font>
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<br> [[Glasgow/Wetlab/References|Willardson ''et al'', 1998]] 
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|| [[Image:PGLTUR-2.PNG|300px]]
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!width="180" |<font face=georgia color=#3366CC size=4>DntR and pDntR</font>
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<br> [[Glasgow/Wetlab/References|Johnson ''et al'', 2002]] 
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|| [[Image:DntR.PNG|300px]]
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|-align="left"
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!width="180" |<font face=georgia color=#3366CC size=4>pQF52</font>
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<br> [[Glasgow/Wetlab/References|Tran ''et al'', 1998]] 
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|| [[Image:PQF52 2.PNG]]
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{| valign=top cellpadding=3
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|-
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!align=center|[[Image:Uog.jpg]] ||    ||  [[Glasgow|<font face=georgia color=#3366CC size=4>Back To <br> Glasgow's <br> Main Page</font>]] || [[Glasgow/Wetlab|<font face=georgia color=#3366CC size=4>Back To <br> Glasgow's <br> Wetlab Log</font>]] ||  
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|}

Latest revision as of 15:21, 26 October 2007

Uog.jpg Back To
Glasgow's
Main Page 		Back To
Glasgow's
Wetlab Log

Resources

Some resources we have found useful in our research.

[http://www.mbio.ncsu.edu/BioEdit/bioedit.html BioEdit] Biological sequence alignment editor
[http://www.ncbi.nlm.nih.gov/BLAST/ BLAST] Compares nucleotide or protein sequences to sequence databases and calculates the statistical significance of matches.
[http://www.ncbi.nlm.nih.gov/ NCBI] National Center fot Biotechnology Information.
[http://openwetware.org/wiki/Main_Page Open Wetware] DNA sequence analysis.
[http://www.acaclone.com/ pDRAW32] DNA sequence analysis.
[http://fokker.wi.mit.edu/primer3/input.htm Primer3] Checking primer design.
[http://www.iit-biotech.de/iit-cgi/oligo-tm.pl Primer Melting Temperatures] Calculating primer melting temperatures for DNA sequencing.
[http://rna.lundberg.gu.se/cutter2/ Webcutter 2.0] Restriction mapping.


Plasmids

Diagrams of the sequences from which we made our parts.

XylR, pu and pr inpGLTUR


Willardson et al, 1998

PGLTUR-2.PNG
DntR and pDntR


Johnson et al, 2002

DntR.PNG
pQF52


Tran et al, 1998

PQF52 2.PNG
Uog.jpg Back To
Glasgow's
Main Page 		Back To
Glasgow's
Wetlab Log
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