Glasgow/Wetlab/References

From 2007.igem.org

< Glasgow | Wetlab(Difference between revisions)
(→References)
(→References)
 
(9 intermediate revisions not shown)
Line 11: Line 11:
Harayama, S., Leppik, R. A., Rekik, M, Mermod, N., Lehrbach, P. R., Reineke, W., Timmis N. K. 1986 Gene order of the TOL catabolic plasmid upper pathway operon and oxidation of both toluene and benzyl alcohol by the xylA product ''Journal of Bacteriology'' 167(2): 455–461 [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=212909 '''PMID: 3015870''']
Harayama, S., Leppik, R. A., Rekik, M, Mermod, N., Lehrbach, P. R., Reineke, W., Timmis N. K. 1986 Gene order of the TOL catabolic plasmid upper pathway operon and oxidation of both toluene and benzyl alcohol by the xylA product ''Journal of Bacteriology'' 167(2): 455–461 [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=212909 '''PMID: 3015870''']
<li>
<li>
-
Holtel, A., Marqués, S., Möhler, I., Jakubzik, U., Timmïs, K. N. 1994 Carbon Source-Dependent Inhibition of xyl Operon Expression of the ''Pseudomonas Putida'' TOL Plasmid ''Journal of Bacteriology'' 176:1773-1776 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=search&term=Carbon%20Source-Dependent%20Inhibition%20of%20xyl%20Operon%20Expression%20of%20the%20''Pseudomonas%20Putida''%20TOL%20Plasmid  | '''PMID: 8132475''']
+
Holtel, A., Marqués, S., Möhler, I., Jakubzik, U., Timmïs, K. N. 1994 Carbon Source-Dependent Inhibition of xyl Operon Expression of the ''Pseudomonas Putida'' TOL Plasmid ''Journal of Bacteriology'' 176:1773-1776 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=search&term=Carbon%20Source-Dependent%20Inhibition%20of%20xyl%20Operon%20Expression%20of%20the%20 '''PMID: 8132475''']
<li>
<li>
Inouye, S., Nakazawa, A., Nakazawa, T. 1988 Nucleotide sequence of the regulatory gene xylR of the TOL plasmid from Pseudomonas putida ''Gene'' 66(2):301-6  [http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retrieve&db=PubMed&list_uids=3169574&dopt=Citation '''PMID: 3169574]
Inouye, S., Nakazawa, A., Nakazawa, T. 1988 Nucleotide sequence of the regulatory gene xylR of the TOL plasmid from Pseudomonas putida ''Gene'' 66(2):301-6  [http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retrieve&db=PubMed&list_uids=3169574&dopt=Citation '''PMID: 3169574]
<li>
<li>
-
Johnson, G. R., Jain, R. K., Spain, J. C. 2002 Origins of the 2,4-Dinitrotoluene Pathway ''Journal of Bacteriology'' 184:4219-4232[http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=135200&rendertype=abstract  '''PMID: 12107140''']
+
Johnson, G. R., Jain, R. K., Spain, J. C. 2002 Origins of the 2,4-Dinitrotoluene Pathway ''Journal of Bacteriology'' 184:4219-4232 [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=135200&rendertype=abstract  '''PMID: 12107140''']
<li>
<li>
Lewenza, S., Falsafi, R. K., Winsor, G., Gooderham, W. J., McPhee, J. B., Brinkman., F. S. L., Hancock, R. E. W. 2005 Construction of a Mini-Tn5 luxCDABE Mutant Library in PA01: A Tool for Identifying Differentially Regulated Genes ''Genome Research'' 15:583-589 [http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=1074373 '''PMID: 15805499''']
Lewenza, S., Falsafi, R. K., Winsor, G., Gooderham, W. J., McPhee, J. B., Brinkman., F. S. L., Hancock, R. E. W. 2005 Construction of a Mini-Tn5 luxCDABE Mutant Library in PA01: A Tool for Identifying Differentially Regulated Genes ''Genome Research'' 15:583-589 [http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=1074373 '''PMID: 15805499''']
Line 28: Line 28:
Parsons, J. F., Greenhagen, B. T., Shi, K., Calabrese, K., Robinson, H., Ladner, J. E. 2007 Structural and Functional Analysis of the Pyocyanin Biosynthetic Protein PhzM from ''Pseudomonas aeruginosa'' ''Biochemistry'' 46:1821-1828
Parsons, J. F., Greenhagen, B. T., Shi, K., Calabrese, K., Robinson, H., Ladner, J. E. 2007 Structural and Functional Analysis of the Pyocyanin Biosynthetic Protein PhzM from ''Pseudomonas aeruginosa'' ''Biochemistry'' 46:1821-1828
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=search&term=17253782  '''PMID:17253782''']
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=search&term=17253782  '''PMID:17253782''']
 +
<li>
 +
Rabaey, K., Boon, N., Hofte, M., Verstraete, W. 2005 Microbial Phenazine Production Enhances Electron Transfer in Biofuel Cells ''Environ. Sci. Technol.'' 39, 3401-3408 [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=15926596&ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum '''PMID: 15926596''']
<li>
<li>
Rogers, K. R., 2005 Recent advances in biosensor techniques for environmental monitoring ''Analytica Chimica Acta '' 568:222-231
Rogers, K. R., 2005 Recent advances in biosensor techniques for environmental monitoring ''Analytica Chimica Acta '' 568:222-231
Line 37: Line 39:
Shingler, V., Bartilson, M., Moore, T. 1993 Cloning and Nucleotide Sequence  of the Gene Encoding the Positive Regulator (DmpR) of the Phenol Catabolic Pathway Encoded by pVI150 and Identification of DmpR as a Member of the NtrC Family of Transcriptional Activators ''Journal of Bacteriology'' 175:1596-1604  
Shingler, V., Bartilson, M., Moore, T. 1993 Cloning and Nucleotide Sequence  of the Gene Encoding the Positive Regulator (DmpR) of the Phenol Catabolic Pathway Encoded by pVI150 and Identification of DmpR as a Member of the NtrC Family of Transcriptional Activators ''Journal of Bacteriology'' 175:1596-1604  
[http://jb.asm.org/cgi/content/abstract/175/6/1596 '''PMID: 8449869''']
[http://jb.asm.org/cgi/content/abstract/175/6/1596 '''PMID: 8449869''']
 +
<li>
 +
Shingler, V., Moore, T. 1994 Sensing of aromatic compounds by the DmpR transcriptional activator of phenol-catabolizing Pseudomonas sp. strain CF600 ''Jounal of Bacteriology'' 176(6):1555-60 [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=8132448&ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum '''PMID: 8132448''']
<li>
<li>
Spanggord, R. J., Spain, J. C., Nishino, S. F., Mortelmans, K. F. 1991 Biodegradation of 2,4-dinitrotoluene by a Pseudomonas sp. ''Applied Environmental Mircobiology'' 57:3200-3205  
Spanggord, R. J., Spain, J. C., Nishino, S. F., Mortelmans, K. F. 1991 Biodegradation of 2,4-dinitrotoluene by a Pseudomonas sp. ''Applied Environmental Mircobiology'' 57:3200-3205  
[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=1781682&ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum '''PMID:1781682''']
[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=1781682&ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum '''PMID:1781682''']
 +
<li>
 +
Tran, L. P., Szabo, L., Orosz, L., Sik, T., Holczinger, A. 1998 Construction of a single-copy integration
 +
vector and its use to study gene expression in ''Bacillus licheniformis'' ''Microbiology'' 144, 2573–2578
 +
[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=9782506&ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum '''PMID: 9782506''']
<li>
<li>
Willardson, B. M., Wilkins, J. F., Rand, T. A., Schupp, J. M., Hill, K. K., Keim, P., Jackson, P. J. 1998 Development and Testing of a Bacterial Biosensor for Toluene-Based Environmental Contaminants ''Applied and Environmental Microbiology'' 64:1006-1012  
Willardson, B. M., Wilkins, J. F., Rand, T. A., Schupp, J. M., Hill, K. K., Keim, P., Jackson, P. J. 1998 Development and Testing of a Bacterial Biosensor for Toluene-Based Environmental Contaminants ''Applied and Environmental Microbiology'' 64:1006-1012  
Line 53: Line 61:
{| valign=top cellpadding=3
{| valign=top cellpadding=3
|-
|-
-
!align=center|[[Image:Uog.jpg]] ||    ||  [[Glasgow|<font face=georgia color=#3366CC size=4>Back To <br> Glasgow's <br> Main Page</font>]] || [[Glasgow/Wetlab|<font face=georgia color=#3366CC size=4>Back To <br> Glasgow's <br> Wetlab Log</font>]]
+
!align=center|[[Image:Uog.jpg]] ||    ||  [[Glasgow|<font face=georgia color=#3366CC size=4>Back To <br> Glasgow's <br> Main Page</font>]] || [[Glasgow/Wetlab|<font face=georgia color=#3366CC size=4>Back To <br> Glasgow's <br> Wetlab Log</font>]] || [[Glasgow/Plan|<font face=georgia color=#3366CC size=4>Back To <br> Glasgow's <br> Project Page</font>]]
|}
|}

Latest revision as of 15:47, 26 October 2007

Uog.jpg Back To
Glasgow's
Main Page 		Back To
Glasgow's
Wetlab Log		 Back To
Glasgow's
Project Page

References

  1. Galvao, T. C., de Lorenzo, V. 2006 Transcriptional Regulators a la Carte: Engineering New Specificities in Bacterial Regulatory Proteins Current Opinion in Biotechnology 17:34-42 [http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retrieve&db=PubMed&list_uids=16359854&dopt=AbstractPlus PMID: 16359854]
  2. Harayama, S., Leppik, R. A., Rekik, M, Mermod, N., Lehrbach, P. R., Reineke, W., Timmis N. K. 1986 Gene order of the TOL catabolic plasmid upper pathway operon and oxidation of both toluene and benzyl alcohol by the xylA product Journal of Bacteriology 167(2): 455–461 [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=212909 PMID: 3015870]
  3. Holtel, A., Marqués, S., Möhler, I., Jakubzik, U., Timmïs, K. N. 1994 Carbon Source-Dependent Inhibition of xyl Operon Expression of the Pseudomonas Putida TOL Plasmid Journal of Bacteriology 176:1773-1776 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=search&term=Carbon%20Source-Dependent%20Inhibition%20of%20xyl%20Operon%20Expression%20of%20the%20 PMID: 8132475]
  4. Inouye, S., Nakazawa, A., Nakazawa, T. 1988 Nucleotide sequence of the regulatory gene xylR of the TOL plasmid from Pseudomonas putida Gene 66(2):301-6 [http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retrieve&db=PubMed&list_uids=3169574&dopt=Citation PMID: 3169574]
  5. Johnson, G. R., Jain, R. K., Spain, J. C. 2002 Origins of the 2,4-Dinitrotoluene Pathway Journal of Bacteriology 184:4219-4232 [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=135200&rendertype=abstract PMID: 12107140]
  6. Lewenza, S., Falsafi, R. K., Winsor, G., Gooderham, W. J., McPhee, J. B., Brinkman., F. S. L., Hancock, R. E. W. 2005 Construction of a Mini-Tn5 luxCDABE Mutant Library in PA01: A Tool for Identifying Differentially Regulated Genes Genome Research 15:583-589 [http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=1074373 PMID: 15805499]
  7. de Lorenzo, V., Herrero, M., Jakubzik, U>, Timmis, K. N. 1990 Mini-Tn5 Transposon Derivatives for Insertion Mutageesis, Promoter Probing, and Chromosomal Insertion of Cloned DNA in Gram-Negative Eubacteria Journal of Bacteriology 172:6568-6572 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=search&term=Mini-Tn5%20Transposon%20Derivatives%20for%20Insertion%20Mutageesis,%20Promoter%20Probing,%20and%20Chromosomal%20Insertion%20of%20Cloned%20DNA%20in%20Gram-Negative%20Eubacteria PMID:2172217]
  8. Mavrodi, D. V., Bonsall, R. F., Delaney, S. M., Soule, M. J., Phillips, G., Thomashow, L. S. 2001 Functional Analysis of Genes for Biosynthesis of Pyocyanin and Phenazine-1-Carboxamide from Pseudomonas Aeruginosa PA01 Journal of Bacteriology 183:6454-6465[http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=search&term=Functional%20Analysis%20of%20Genes%20for%20Biosynthesis%20of%20Pyocyanin%20and%20Phenazine-1-Carboxamide%20from%20Pseudomonas%20Aeruginosa PMID:11591691]
  9. Paitan, Y., Biran, D., Biran., I, Shechter, N., Babai, R., Rishpon, J., Ron, E. Z. 2003 On-line and in situ biosensors for monitoring environmental pollution Biotechnology advances 22:27-33 [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=14623041&ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum PMID: 14623041]
  10. Parsons, J. F., Greenhagen, B. T., Shi, K., Calabrese, K., Robinson, H., Ladner, J. E. 2007 Structural and Functional Analysis of the Pyocyanin Biosynthetic Protein PhzM from Pseudomonas aeruginosa Biochemistry 46:1821-1828 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=search&term=17253782 PMID:17253782]
  11. Rabaey, K., Boon, N., Hofte, M., Verstraete, W. 2005 Microbial Phenazine Production Enhances Electron Transfer in Biofuel Cells Environ. Sci. Technol. 39, 3401-3408 [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=15926596&ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum PMID: 15926596]
  12. Rogers, K. R., 2005 Recent advances in biosensor techniques for environmental monitoring Analytica Chimica Acta 568:222-231 [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=17761264&ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum PMID:17761264]
  13. Ron, E. Z. 2007 Biosensing environmental pollution Current Opinion in Biotechnology 18:252-258 [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=17532203&ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum PMID: 17532203]
  14. Shingler, V., Bartilson, M., Moore, T. 1993 Cloning and Nucleotide Sequence of the Gene Encoding the Positive Regulator (DmpR) of the Phenol Catabolic Pathway Encoded by pVI150 and Identification of DmpR as a Member of the NtrC Family of Transcriptional Activators Journal of Bacteriology 175:1596-1604 [http://jb.asm.org/cgi/content/abstract/175/6/1596 PMID: 8449869]
  15. Shingler, V., Moore, T. 1994 Sensing of aromatic compounds by the DmpR transcriptional activator of phenol-catabolizing Pseudomonas sp. strain CF600 Jounal of Bacteriology 176(6):1555-60 [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=8132448&ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum PMID: 8132448]
  16. Spanggord, R. J., Spain, J. C., Nishino, S. F., Mortelmans, K. F. 1991 Biodegradation of 2,4-dinitrotoluene by a Pseudomonas sp. Applied Environmental Mircobiology 57:3200-3205 [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=1781682&ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum PMID:1781682]
  17. Tran, L. P., Szabo, L., Orosz, L., Sik, T., Holczinger, A. 1998 Construction of a single-copy integration vector and its use to study gene expression in Bacillus licheniformis Microbiology 144, 2573–2578 [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=9782506&ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum PMID: 9782506]
  18. Willardson, B. M., Wilkins, J. F., Rand, T. A., Schupp, J. M., Hill, K. K., Keim, P., Jackson, P. J. 1998 Development and Testing of a Bacterial Biosensor for Toluene-Based Environmental Contaminants Applied and Environmental Microbiology 64:1006-1012 [http://aem.asm.org/cgi/content/abstract/64/3/1006 PMID: 9501440]
  19. Wise, A. A., Kuske, C. R. 2000 Generation of Novel Bacterial Regulatory Proteins that Detect Priority Pollutant Phenols Applied and Environmental Microbiology 66:163 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=search&term=Generation%20of%20Novel%20Bacterial%20Regulatory%20Proteins%20that%20Detect%20Priority%20Pollutant%20Phenols PMID: 10618218]
  20. Worsey M. J, Williams P. A. 1975 Metabolism of toluene and xylenes by Pseudomonas (putida (arvilla) mt-2: evidence for a new function of the TOL plasmid Jounal of Bacteriology 124(1):7-13 [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=1176436&ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum PMID: 1176436]
Uog.jpg Back To
Glasgow's
Main Page 		Back To
Glasgow's
Wetlab Log 		Back To
Glasgow's
Project Page
Retrieved from "http://2007.igem.org/wiki/index.php/Glasgow/Wetlab/References"