Glasgow/Wetlab/References
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| - | Galvao, T. C., de Lorenzo, V. 2006 Transcriptional Regulators a la Carte: Engineering New Specificities in Bacterial Regulatory Proteins ''Current Opinion in Biotechnology'' 17:34-42 [http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retrieve&db=PubMed&list_uids=16359854&dopt=AbstractPlus '''PMID: | + | Galvao, T. C., de Lorenzo, V. 2006 Transcriptional Regulators a la Carte: Engineering New Specificities in Bacterial Regulatory Proteins ''Current Opinion in Biotechnology'' 17:34-42 [http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retrieve&db=PubMed&list_uids=16359854&dopt=AbstractPlus '''PMID: 16359854'''] |
<li> | <li> | ||
| - | + | Harayama, S., Leppik, R. A., Rekik, M, Mermod, N., Lehrbach, P. R., Reineke, W., Timmis N. K. 1986 Gene order of the TOL catabolic plasmid upper pathway operon and oxidation of both toluene and benzyl alcohol by the xylA product ''Journal of Bacteriology'' 167(2): 455–461 [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=212909 '''PMID: 3015870'''] | |
<li> | <li> | ||
| - | + | Holtel, A., Marqués, S., Möhler, I., Jakubzik, U., Timmïs, K. N. 1994 Carbon Source-Dependent Inhibition of xyl Operon Expression of the ''Pseudomonas Putida'' TOL Plasmid ''Journal of Bacteriology'' 176:1773-1776 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=search&term=Carbon%20Source-Dependent%20Inhibition%20of%20xyl%20Operon%20Expression%20of%20the%20 '''PMID: 8132475'''] | |
<li> | <li> | ||
| - | + | Inouye, S., Nakazawa, A., Nakazawa, T. 1988 Nucleotide sequence of the regulatory gene xylR of the TOL plasmid from Pseudomonas putida ''Gene'' 66(2):301-6 [http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retrieve&db=PubMed&list_uids=3169574&dopt=Citation '''PMID: 3169574] | |
<li> | <li> | ||
| - | + | Johnson, G. R., Jain, R. K., Spain, J. C. 2002 Origins of the 2,4-Dinitrotoluene Pathway ''Journal of Bacteriology'' 184:4219-4232 [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=135200&rendertype=abstract '''PMID: 12107140'''] | |
<li> | <li> | ||
| - | + | Lewenza, S., Falsafi, R. K., Winsor, G., Gooderham, W. J., McPhee, J. B., Brinkman., F. S. L., Hancock, R. E. W. 2005 Construction of a Mini-Tn5 luxCDABE Mutant Library in PA01: A Tool for Identifying Differentially Regulated Genes ''Genome Research'' 15:583-589 [http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=1074373 '''PMID: 15805499'''] | |
<li> | <li> | ||
| - | [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=search&term=Mini-Tn5%20Transposon%20Derivatives%20for%20Insertion%20Mutageesis,%20Promoter%20Probing,%20and%20Chromosomal%20Insertion%20of%20Cloned%20DNA%20in%20Gram-Negative%20Eubacteria | + | de Lorenzo, V., Herrero, M., Jakubzik, U>, Timmis, K. N. 1990 Mini-Tn5 Transposon Derivatives for Insertion Mutageesis, Promoter Probing, and Chromosomal Insertion of Cloned DNA in Gram-Negative Eubacteria ''Journal of Bacteriology 172:6568-6572 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=search&term=Mini-Tn5%20Transposon%20Derivatives%20for%20Insertion%20Mutageesis,%20Promoter%20Probing,%20and%20Chromosomal%20Insertion%20of%20Cloned%20DNA%20in%20Gram-Negative%20Eubacteria '''PMID:2172217'''] |
<li> | <li> | ||
| - | + | Mavrodi, D. V., Bonsall, R. F., Delaney, S. M., Soule, M. J., Phillips, G., Thomashow, L. S. 2001 Functional Analysis of Genes for Biosynthesis of Pyocyanin and Phenazine-1-Carboxamide from Pseudomonas Aeruginosa PA01 ''Journal of Bacteriology'' 183:6454-6465[http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=search&term=Functional%20Analysis%20of%20Genes%20for%20Biosynthesis%20of%20Pyocyanin%20and%20Phenazine-1-Carboxamide%20from%20Pseudomonas%20Aeruginosa '''PMID:11591691'''] | |
<li> | <li> | ||
| - | + | Paitan, Y., Biran, D., Biran., I, Shechter, N., Babai, R., Rishpon, J., Ron, E. Z. 2003 On-line and in situ biosensors for monitoring environmental pollution ''Biotechnology advances'' 22:27-33 | |
| + | [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=14623041&ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum '''PMID: 14623041'''] | ||
<li> | <li> | ||
| - | + | Parsons, J. F., Greenhagen, B. T., Shi, K., Calabrese, K., Robinson, H., Ladner, J. E. 2007 Structural and Functional Analysis of the Pyocyanin Biosynthetic Protein PhzM from ''Pseudomonas aeruginosa'' ''Biochemistry'' 46:1821-1828 | |
| + | [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=search&term=17253782 '''PMID:17253782'''] | ||
<li> | <li> | ||
| - | [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch= | + | Rabaey, K., Boon, N., Hofte, M., Verstraete, W. 2005 Microbial Phenazine Production Enhances Electron Transfer in Biofuel Cells ''Environ. Sci. Technol.'' 39, 3401-3408 [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=15926596&ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum '''PMID: 15926596'''] |
<li> | <li> | ||
| - | [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch= | + | Rogers, K. R., 2005 Recent advances in biosensor techniques for environmental monitoring ''Analytica Chimica Acta '' 568:222-231 |
| + | [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=17761264&ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum '''PMID:17761264'''] | ||
<li> | <li> | ||
| - | [http:// | + | Ron, E. Z. 2007 Biosensing environmental pollution ''Current Opinion in Biotechnology'' 18:252-258 |
| + | [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=17532203&ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum '''PMID: 17532203'''] | ||
<li> | <li> | ||
| - | + | Shingler, V., Bartilson, M., Moore, T. 1993 Cloning and Nucleotide Sequence of the Gene Encoding the Positive Regulator (DmpR) of the Phenol Catabolic Pathway Encoded by pVI150 and Identification of DmpR as a Member of the NtrC Family of Transcriptional Activators ''Journal of Bacteriology'' 175:1596-1604 | |
| + | [http://jb.asm.org/cgi/content/abstract/175/6/1596 '''PMID: 8449869'''] | ||
<li> | <li> | ||
| - | + | Shingler, V., Moore, T. 1994 Sensing of aromatic compounds by the DmpR transcriptional activator of phenol-catabolizing Pseudomonas sp. strain CF600 ''Jounal of Bacteriology'' 176(6):1555-60 [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=8132448&ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum '''PMID: 8132448'''] | |
<li> | <li> | ||
| - | [http://www.ncbi.nlm.nih.gov/sites/entrez? | + | Spanggord, R. J., Spain, J. C., Nishino, S. F., Mortelmans, K. F. 1991 Biodegradation of 2,4-dinitrotoluene by a Pseudomonas sp. ''Applied Environmental Mircobiology'' 57:3200-3205 |
| + | [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=1781682&ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum '''PMID:1781682'''] | ||
<li> | <li> | ||
| - | [http://www.ncbi.nlm.nih.gov/sites/entrez? | + | Tran, L. P., Szabo, L., Orosz, L., Sik, T., Holczinger, A. 1998 Construction of a single-copy integration |
| + | vector and its use to study gene expression in ''Bacillus licheniformis'' ''Microbiology'' 144, 2573–2578 | ||
| + | [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=9782506&ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum '''PMID: 9782506'''] | ||
| + | <li> | ||
| + | Willardson, B. M., Wilkins, J. F., Rand, T. A., Schupp, J. M., Hill, K. K., Keim, P., Jackson, P. J. 1998 Development and Testing of a Bacterial Biosensor for Toluene-Based Environmental Contaminants ''Applied and Environmental Microbiology'' 64:1006-1012 | ||
| + | [http://aem.asm.org/cgi/content/abstract/64/3/1006 '''PMID: 9501440'''] | ||
| + | <li> | ||
| + | Wise, A. A., Kuske, C. R. 2000 Generation of Novel Bacterial Regulatory Proteins that Detect Priority Pollutant Phenols ''Applied and Environmental Microbiology 66:163 | ||
| + | [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=search&term=Generation%20of%20Novel%20Bacterial%20Regulatory%20Proteins%20that%20Detect%20Priority%20Pollutant%20Phenols '''PMID: 10618218'''] | ||
| + | <li> | ||
| + | Worsey M. J, Williams P. A. 1975 Metabolism of toluene and xylenes by Pseudomonas (putida (arvilla) mt-2: evidence for a new function of the TOL plasmid ''Jounal of Bacteriology'' 124(1):7-13 | ||
| + | [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=1176436&ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum '''PMID: 1176436'''] | ||
</ol> | </ol> | ||
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| - | !align=center|[[Image:Uog.jpg]] || || [[Glasgow|<font face=georgia color=#3366CC size=4>Back To <br> Glasgow's <br> Main Page</font>]] || [[Glasgow/Wetlab|<font face=georgia color=#3366CC size=4>Back To <br> Glasgow's <br> Wetlab Log</font>]] | + | !align=center|[[Image:Uog.jpg]] || || [[Glasgow|<font face=georgia color=#3366CC size=4>Back To <br> Glasgow's <br> Main Page</font>]] || [[Glasgow/Wetlab|<font face=georgia color=#3366CC size=4>Back To <br> Glasgow's <br> Wetlab Log</font>]] || [[Glasgow/Plan|<font face=georgia color=#3366CC size=4>Back To <br> Glasgow's <br> Project Page</font>]] |
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Latest revision as of 15:47, 26 October 2007
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References
- Galvao, T. C., de Lorenzo, V. 2006 Transcriptional Regulators a la Carte: Engineering New Specificities in Bacterial Regulatory Proteins Current Opinion in Biotechnology 17:34-42 [http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retrieve&db=PubMed&list_uids=16359854&dopt=AbstractPlus PMID: 16359854]
- Harayama, S., Leppik, R. A., Rekik, M, Mermod, N., Lehrbach, P. R., Reineke, W., Timmis N. K. 1986 Gene order of the TOL catabolic plasmid upper pathway operon and oxidation of both toluene and benzyl alcohol by the xylA product Journal of Bacteriology 167(2): 455–461 [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=212909 PMID: 3015870]
- Holtel, A., Marqués, S., Möhler, I., Jakubzik, U., Timmïs, K. N. 1994 Carbon Source-Dependent Inhibition of xyl Operon Expression of the Pseudomonas Putida TOL Plasmid Journal of Bacteriology 176:1773-1776 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=search&term=Carbon%20Source-Dependent%20Inhibition%20of%20xyl%20Operon%20Expression%20of%20the%20 PMID: 8132475]
- Inouye, S., Nakazawa, A., Nakazawa, T. 1988 Nucleotide sequence of the regulatory gene xylR of the TOL plasmid from Pseudomonas putida Gene 66(2):301-6 [http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retrieve&db=PubMed&list_uids=3169574&dopt=Citation PMID: 3169574]
- Johnson, G. R., Jain, R. K., Spain, J. C. 2002 Origins of the 2,4-Dinitrotoluene Pathway Journal of Bacteriology 184:4219-4232 [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=135200&rendertype=abstract PMID: 12107140]
- Lewenza, S., Falsafi, R. K., Winsor, G., Gooderham, W. J., McPhee, J. B., Brinkman., F. S. L., Hancock, R. E. W. 2005 Construction of a Mini-Tn5 luxCDABE Mutant Library in PA01: A Tool for Identifying Differentially Regulated Genes Genome Research 15:583-589 [http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=1074373 PMID: 15805499]
- de Lorenzo, V., Herrero, M., Jakubzik, U>, Timmis, K. N. 1990 Mini-Tn5 Transposon Derivatives for Insertion Mutageesis, Promoter Probing, and Chromosomal Insertion of Cloned DNA in Gram-Negative Eubacteria Journal of Bacteriology 172:6568-6572 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=search&term=Mini-Tn5%20Transposon%20Derivatives%20for%20Insertion%20Mutageesis,%20Promoter%20Probing,%20and%20Chromosomal%20Insertion%20of%20Cloned%20DNA%20in%20Gram-Negative%20Eubacteria PMID:2172217]
- Mavrodi, D. V., Bonsall, R. F., Delaney, S. M., Soule, M. J., Phillips, G., Thomashow, L. S. 2001 Functional Analysis of Genes for Biosynthesis of Pyocyanin and Phenazine-1-Carboxamide from Pseudomonas Aeruginosa PA01 Journal of Bacteriology 183:6454-6465[http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=search&term=Functional%20Analysis%20of%20Genes%20for%20Biosynthesis%20of%20Pyocyanin%20and%20Phenazine-1-Carboxamide%20from%20Pseudomonas%20Aeruginosa PMID:11591691]
- Paitan, Y., Biran, D., Biran., I, Shechter, N., Babai, R., Rishpon, J., Ron, E. Z. 2003 On-line and in situ biosensors for monitoring environmental pollution Biotechnology advances 22:27-33 [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=14623041&ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum PMID: 14623041]
- Parsons, J. F., Greenhagen, B. T., Shi, K., Calabrese, K., Robinson, H., Ladner, J. E. 2007 Structural and Functional Analysis of the Pyocyanin Biosynthetic Protein PhzM from Pseudomonas aeruginosa Biochemistry 46:1821-1828 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=search&term=17253782 PMID:17253782]
- Rabaey, K., Boon, N., Hofte, M., Verstraete, W. 2005 Microbial Phenazine Production Enhances Electron Transfer in Biofuel Cells Environ. Sci. Technol. 39, 3401-3408 [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=15926596&ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum PMID: 15926596]
- Rogers, K. R., 2005 Recent advances in biosensor techniques for environmental monitoring Analytica Chimica Acta 568:222-231 [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=17761264&ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum PMID:17761264]
- Ron, E. Z. 2007 Biosensing environmental pollution Current Opinion in Biotechnology 18:252-258 [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=17532203&ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum PMID: 17532203]
- Shingler, V., Bartilson, M., Moore, T. 1993 Cloning and Nucleotide Sequence of the Gene Encoding the Positive Regulator (DmpR) of the Phenol Catabolic Pathway Encoded by pVI150 and Identification of DmpR as a Member of the NtrC Family of Transcriptional Activators Journal of Bacteriology 175:1596-1604 [http://jb.asm.org/cgi/content/abstract/175/6/1596 PMID: 8449869]
- Shingler, V., Moore, T. 1994 Sensing of aromatic compounds by the DmpR transcriptional activator of phenol-catabolizing Pseudomonas sp. strain CF600 Jounal of Bacteriology 176(6):1555-60 [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=8132448&ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum PMID: 8132448]
- Spanggord, R. J., Spain, J. C., Nishino, S. F., Mortelmans, K. F. 1991 Biodegradation of 2,4-dinitrotoluene by a Pseudomonas sp. Applied Environmental Mircobiology 57:3200-3205 [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=1781682&ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum PMID:1781682]
- Tran, L. P., Szabo, L., Orosz, L., Sik, T., Holczinger, A. 1998 Construction of a single-copy integration vector and its use to study gene expression in Bacillus licheniformis Microbiology 144, 2573–2578 [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=9782506&ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum PMID: 9782506]
- Willardson, B. M., Wilkins, J. F., Rand, T. A., Schupp, J. M., Hill, K. K., Keim, P., Jackson, P. J. 1998 Development and Testing of a Bacterial Biosensor for Toluene-Based Environmental Contaminants Applied and Environmental Microbiology 64:1006-1012 [http://aem.asm.org/cgi/content/abstract/64/3/1006 PMID: 9501440]
- Wise, A. A., Kuske, C. R. 2000 Generation of Novel Bacterial Regulatory Proteins that Detect Priority Pollutant Phenols Applied and Environmental Microbiology 66:163 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=search&term=Generation%20of%20Novel%20Bacterial%20Regulatory%20Proteins%20that%20Detect%20Priority%20Pollutant%20Phenols PMID: 10618218]
- Worsey M. J, Williams P. A. 1975 Metabolism of toluene and xylenes by Pseudomonas (putida (arvilla) mt-2: evidence for a new function of the TOL plasmid Jounal of Bacteriology 124(1):7-13 [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=1176436&ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum PMID: 1176436]
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