Edinburgh/Yoghurt/Proof of concept

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[[Image:Edinburgh Uni Logo.jpg|50 px]]
[[Image:Edinburgh Uni Logo.jpg|50 px]]
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[[Edinburgh/Yoghurt| Introduction]] | [[Edinburgh/Yoghurt/Applications|Applications]] | [[Edinburgh/Yoghurt/Design|Design]] | [[Edinburgh/Yoghurt/Modelling|Modelling]] | [[Edinburgh/Yoghurt/Wet Lab|Wet Lab]] | [[Edinburgh/Yoghurt/Proof of concept|Proof of concept]] | [[Edinburgh/Yoghurt/References|References]]
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[[Edinburgh/Yoghurt| Introduction]] | [[Edinburgh/Yoghurt/Applications|Applications]] | [[Edinburgh/Yoghurt/Design|Design]] | [[Edinburgh/Yoghurt/Modelling|Modelling]] | [[Edinburgh/Yoghurt/Wet Lab|Wet Lab]] | [[Edinburgh/Yoghurt/Proof of concept|Proof of concept]] | [[Edinburgh/Future| Future Directions]] | [[Edinburgh/Yoghurt/References|References]]
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__TOC__
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In order to test the feasibility of gene expression in ''Lactobacillus'' and the possibility of making self flavouring yoghurt, we required a proof of concept.
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In order to test the feasibility of gene expression in ''Lactobacillus'' and the possibility of making self-flavouring yoghurt, we required a proof of concept.
-
As both the pigment and flavour pathways are rather complex and will require modification and optimisation before their expression in yoghurt we are going to use the much simpler RFP gene as a proof of concept.
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As both the pigment and flavour pathways are rather complex and will require modification and optimisation before their expression in yoghurt we planned to use the much simpler Red Fluorescent Protein (RFP) gene as a proof of concept.
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So far we have managed to transform a number of RFP-pTG262 vectors containing a variety of promoters into ''Bacillus subtillis'', a gram positive bacterium.
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So far we have managed to transform a number of RFP-pTG262 vectors containing a variety of promoters into ''E. coli'' and also ''Bacillus subtilis'', a gram positive bacterium.
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We chose to initially transform ''Bacillus subtillis'' with our proof of concept vectors over ''Lactobacillus'' as the bacterium has a much simpler transformation process, and members of the French lab have had success when they previously worked with the organism.
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[[Image:PLac-RFP-pTG262 Bacillus.JPG|thumb|200 px|'''Fig. 1:''' ''E. coli'' which has been successfully transformed with the pTG262-pLac-RFP construct]]
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[[Image:PTet-RFP-pTG262 Bacillus.JPG|thumb|'''Fig. 2:''' ''E. coli'' which has been successfully transformed with pTG262-Ptet-RFP construct|200 px]]
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We chose to initially transform ''Bacillus subtilis'' with our proof of concept vectors over ''Lactobacillus'' for two reasons:
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====pTG262-PLac-RFP construct====
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*1. the bacterium is naturally competent at certain stages of its life cycle and therefore has a much simpler transformation process.
 +
*2. members of the French lab have previous experience of transforming ''Bacillus subtilis''.
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==pTG262-PLac-RFP construct==
We have inserted the lactose induced RFP gene into the pTG262 vector
We have inserted the lactose induced RFP gene into the pTG262 vector
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* this vector was then transformed into E. coli
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* this vector was then transformed into ''E. coli''
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* growth on IPTG-Xgal media resulted in RFP expression and production of red colonies
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* red colonies were produced on standard growth media. These can be viewed in Figure 1.
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==pTG262-Ptet-RFP construct==
 +
 
 +
We ligated the Ptet induced RFP biobrick into the pTG262 vector.  We then transformed the vector into ''E. coli''.
 +
 
 +
RFP synthesis was observed.
 +
 
 +
Colonies can be viewed in Figure 2.
 +
 
 +
 
 +
 
 +
==pTG262 expression in ''Bacillus subtilis''==
 +
 
 +
After the successful expression of both the pTG262 RFP constructs in ''E. coli'', we decided to determine if pTG262 could be stably maintained in ''Bacillus subtilis''.
 +
 
 +
To do this we transformed both the pTG262 and Plac-RFP-pTG262 vectors into ''Bacillus subtilis''.
 +
 
 +
Figure 3 depicts the successful transformation and expression of pTG262 in ''Bacillus subtilis''.
 +
 
 +
This is determined by the ability of ''Bacillus'' to grow on chloramphenicol plates. No growth was observed on negative control plates.
 +
 
 +
Unfortunately RFP was not expressed from the promoter, as shown by the colonies being white rather than red.  We are attributing this to the ''Bacillus'' transcription machinery (particularly RNA polymerase and its associated sigma factors) not recognising the promoter.
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[[Image:PTG262 Bacillus colonies.JPG|thumb|left|'''Fig. 3:''' ''Bacillus subtillis'' which has been successfully transformed with pTG262-plac-RFP vector|300 px]]  [[Image:PTG262-lacz Bacillus.JPG|thumb|300 px|'''Fig. 4:''' ''E. coli'' which has been successfully transformed with lacz-pTG262 containing vector (blue colonies)]]
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'''Further experimentation'''
 
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* transform pTG262-Plac-RFP vector into ''Lactobacillus bulgaricus'' and ''Steptococcus thermophilus''
 
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* plate colonies onto IPTG-Xgal media and see if RFP is expressed
 
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* introduce LAB with pTG262-Plac-RFP vector into yoghurt started culture & make yoghurt
 
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* see if yoghurt produced turns red
 
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Presently we are transforming the LAB with the pTG262-Plac-RFP vector
 
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'''Transforming ''Bacillus subtillis'' with pTG262 vector'''
 
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[[Image:PLac-RFP-pTG262 Bacillus.JPG|thumb|300 px|''Bacillus subtilis'' colonies successfully transformed with the pTG262-pLac-RFP construct]]
 
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* we have managed to transform the pTG262 vector into ''Bacillus subtillis'' sucessfully
 
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* colonies of ''Bacillus'' growing on chloramphenicol plates can be viewed in Fig 1.
 
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====pTG262-Pbad-RFP construct====
 
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For sugar induced gene expression, we have decided to insert the arabinose indued Pbad promoter in front of the RPF gene in the pTG262 vector.
 
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* vector will be inserted into ''E. coli''
 
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* construct will be for arabinose induction of RFP production (plate on arabinose containing media)
 
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* if successful P-bad-RFP containing pTG262 vector will be transformed into LAB
 
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* LAB with Pbad-RFP vector will be used to make yogurt
 
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* we will then test for red colour production upon the addition of arabinose
 
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Possible problems with sugar induction of flavour and colours, could result from leaky promoter.  Where the flavour and colour genes are expressed in the absence of the sugar inducer resulting in the yoghurt being flavoured or coloured when its supposed to be 'plain'
 
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[[Edinburgh/Yoghurt| Introduction]] | [[Edinburgh/Yoghurt/Applications|Applications]] | [[Edinburgh/Yoghurt/Design|Design]] | [[Edinburgh/Yoghurt/Modelling|Modelling]] | [[Edinburgh/Yoghurt/Wet Lab|Wet Lab]] | [[Edinburgh/Yoghurt/Proof of concept|Proof of concept]] | [[Edinburgh/Yoghurt/References|References]]
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----
 +
[[Edinburgh/Yoghurt| Introduction]] | [[Edinburgh/Yoghurt/Applications|Applications]] | [[Edinburgh/Yoghurt/Design|Design]] | [[Edinburgh/Yoghurt/Modelling|Modelling]] | [[Edinburgh/Yoghurt/Wet Lab|Wet Lab]] | [[Edinburgh/Yoghurt/Proof of concept|Proof of concept]] | [[Edinburgh/Future| Future Directions]] | [[Edinburgh/Yoghurt/References|References]]
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Latest revision as of 20:26, 26 October 2007


Edinburgh Uni Logo.jpg Introduction | Applications | Design | Modelling | Wet Lab | Proof of concept | Future Directions | References


Contents

[hide]


In order to test the feasibility of gene expression in Lactobacillus and the possibility of making self-flavouring yoghurt, we required a proof of concept.

As both the pigment and flavour pathways are rather complex and will require modification and optimisation before their expression in yoghurt we planned to use the much simpler Red Fluorescent Protein (RFP) gene as a proof of concept.

So far we have managed to transform a number of RFP-pTG262 vectors containing a variety of promoters into E. coli and also Bacillus subtilis, a gram positive bacterium.

Fig. 1: E. coli which has been successfully transformed with the pTG262-pLac-RFP construct
Fig. 2: E. coli which has been successfully transformed with pTG262-Ptet-RFP construct

We chose to initially transform Bacillus subtilis with our proof of concept vectors over Lactobacillus for two reasons:

  • 1. the bacterium is naturally competent at certain stages of its life cycle and therefore has a much simpler transformation process.
  • 2. members of the French lab have previous experience of transforming Bacillus subtilis.


pTG262-PLac-RFP construct

We have inserted the lactose induced RFP gene into the pTG262 vector

  • this vector was then transformed into E. coli
  • red colonies were produced on standard growth media. These can be viewed in Figure 1.


pTG262-Ptet-RFP construct

We ligated the Ptet induced RFP biobrick into the pTG262 vector. We then transformed the vector into E. coli.

RFP synthesis was observed.

Colonies can be viewed in Figure 2.


pTG262 expression in Bacillus subtilis

After the successful expression of both the pTG262 RFP constructs in E. coli, we decided to determine if pTG262 could be stably maintained in Bacillus subtilis.

To do this we transformed both the pTG262 and Plac-RFP-pTG262 vectors into Bacillus subtilis.

Figure 3 depicts the successful transformation and expression of pTG262 in Bacillus subtilis.

This is determined by the ability of Bacillus to grow on chloramphenicol plates. No growth was observed on negative control plates.

Unfortunately RFP was not expressed from the promoter, as shown by the colonies being white rather than red. We are attributing this to the Bacillus transcription machinery (particularly RNA polymerase and its associated sigma factors) not recognising the promoter.

Fig. 3: Bacillus subtillis which has been successfully transformed with pTG262-plac-RFP vector
Fig. 4: E. coli which has been successfully transformed with lacz-pTG262 containing vector (blue colonies)





















Introduction | Applications | Design | Modelling | Wet Lab | Proof of concept | Future Directions | References