Glasgow/Wetlab/Results

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Results

Pyocyanin

The genes encoding the two final enzymes involved in the pyocyanin biosynthesis pathway, Phz M and Phz S, were cloned and successfully created into biobricks. They have been subcloned to include terminators after the genes. The phenzine biosynthesis operon responsible for the production of the precursor phenazine PCA, was over 7kb long and proved troublesome to clone. An alternative strategy involved cloning this operon in two parts. PhzE, PhzF and PhzG were cloned into biobrick format and are currently undergoing site directed mutagenesis. Pseudomonas fluorescens 2-71 was obtained as an alternative source of PCA.

XylR and BETX Chemicals

Figure 1: The effect of a variety of environmental pollutants on lacZ production by E.coli containing pQF52 xylR, when grown on LB media, as measured by the Miller Assay.

The XylR transcriptional regulator system was initially tested through the induction of the reporter gene beta-galactosidase, linked to the pU promoter. Initial studies were not performed in a biobrick system as they were occurring concurrently with the creation of novel biobricks. Instead a construct was utilised based on the pQF52 reporter plasmid where the xylA promoter was fused to the lacZ reporter gene. The xylR regulatory gene was cloned in the opposite orientation. The plasmid was termed pQF52 xylR.

E.coli containing pQF52 dntR were grown in LB culture overnight, before addition of a range of aromatic environmental pollutants were added. Production of lacZ was assayed for by the Miller Assay (Protocol 10).

As seen in Figure 1, lacZ production increased signicantly as salicylate concentration increased. A low background production of lacZ was observed in the absence of environmental pollutant.

The XylR system was considered suitable for further development and so biobricks were constructed to facilitate a biosensor involving the production of the electrochemical mediator pyocyanin. In order to test alternative reporter systems, a sensor system where XylR transcriptionally regulates the production of the renilla luciferase has been successfully created using biobricks RBS BBa_J61101 and luc BBa_J52008.

DntR and Dinitrotoluenes

Figure 2:The effect of salicylate on lacZ production by E.coli containing pQF52 dntR, when grown on LB media, as measured by the Miller Assay.

Figure 3:The effect of salicylate on lacZ production by E.coli containing pQF52 dntR, when grown on minimal media, as measured by the Miller Assay. N.B. Salicylate concentration is presented on a logarithmic scale.

The DntR transcriptional regulator system was tested through the induction of the reporter gene beta-galactosidase, linked to the dntA promoter. Initial studies were not performed in a biobrick system as they were occurring concurrently with the creation of novel biobricks. Instead a construct was utilised based on the pQF52 reporter plasmid where the dntA promoter was fused to the lacZ reporter gene. The dmpR regulatory gene was cloned in the opposite orientation. The plasmid was termed pQF52 dntR.

E.coli containing pQF52 dntR were grown in LB culture overnight, before addition of a range of concentrations of salicylate were added. Production of lacZ was assayed for by the Miller Assay (Protocol 10).

As seen in Figures 2 and 3, lacZ production increased signicantly as salicylate concentration increased. A background production of lacZ was observed, therefore further testing was performed to optimise the assay by growing the cells on minimal media. The reason for this was to limit the amounts of tryptophan which was considered a potential mimic of salicylate. The range of concentrations of salicylate were extended to determine the linearity of the response. The results are shown in Figure X. There was no reduction in background activity with no salicylate. As salicylate increased the response increased, this shows that the sensitivity of the assay is from 10 um to 10 mM.

The dntR system was considered suitable for further development and so biobricks were constructed to facilitate a biosensor involving the production of the electrochemical mediator pyocyanin.

DmpR and Phenolic Compounds
The DmpR transcriptional regulator system was tested through the induction of the reporter gene beta-galactosidase, linked to the dmp operon promoter. Initial studies were not performed in a biobrick system as they were occurring concurrently with the creation of novel biobricks. Instead a construct was obtained by personal communication with A.Wise where the promoter of the dmp operon had been fused to the lacZ reporter gene and inserted chromosomally at the trp locus. The dmpR regulatory gene was contained on a plasmid – p322-dmpR (RI) which was a derivative of pBR322.

E.coli containing the chromosomal insert and the plasmid p322-dmpR (RI) were grown on a variety of agar media. The media that were tested were rich media (Luria-Bertani - LB), minimal media and spent LB media. The colonies were blotted onto a sheet of hybrid N nylon membrane. The membrane was placed in a petri dish on top of thin layer of agar containing X-gal before adding phenol, cresols, dinitrophenols, dimethylphenols and dichlorophenols and incubated for 2 hrs at 37 C. The membranes were then assessed for the production of blue colouration.

There was shown to be a high background production of lacZ in all of the media tried. The spent LB was the best of the media tried, althought even with this there was a high background level of lacZ production. This was thought to be due to the presence of the amino acid, tryptophan, in the media. This amino acid is essential for the growth of E.coli. Its chemical structure is similar to phenol and could therefore be triggering expression of lacZ.

It was decided that due to the background induction of lacZ by tryptophan, the transcriptional regulator DmpR would not be studied further. The production of the relevant biobricks was therefore halted.