NYMU Taipei/Protocols2
From 2007.igem.org
Wet-Lab Protocols
- [http://www.protocol-online.org/ Protocol online]
- PCR (7/20)
- RT-PCR
- Q-PCR
- Quantitation of Nucleic acid concentration
- http://en.wikipedia.org/wiki/Quantification_of_nucleic_acids Wikipedia
- http://www.piercenet.com/Objects/View.cfm?type=Page&ID=0A0A7BB1-7582-4611-A116-6F583EC01666 Pierce
- http://mcbl.iisc.ernet.in/Welcome to MCBL/Faculty/Parag/microarray workshop details/quantitation.html India
- http://www.kreatech.com/pages/Focus-Areas/*-Hybridization-___-Labeling-protocols/Small-RNA-Labeling-protocol/ Kreatech Biotechnology
- <span lang="EN-US" style="font-size: 9.5pt; font-family: Arial http://www.neb.com/nebecomm/tech_reference/restriction_enzymes/setting_up_reaction.asp Setting Up a Restriction Endonuclease Reaction</span>
- DNA Analysis through Gel Electrophoresis
- Ligate blunt or cohesive ends in 5 minutes at room temperature
- http://www.neb.com/nebecomm/products/productM2200.asp Quick Ligation Kit (NEB)
- http://www.ubi.ca/cart/index.php/cPath/27_163_165 Fast Ligation Kit (UBI)
- http://www.epibio.com/item.asp?ID=296 Fast-Link DNA Ligation Kit (EPICENTRE Biotechnologies)
- http://www.fermentas.com/catalog/kits/kitrapidligation.htm Rapid Ligation Kit (Fermentas)
- All of these are just normal ligase buffers with PEG8000 at a 10-12% concentration. The NEB catalogue gives the original reference.
Use of crowding agents like PEG allow 5-minute sticky end ligations.
- Vector construction
- Vector sequences
- [[http://seq.yeastgenome.org/vectordb/ VectorDB - Molecular Biology Vector Sequence Database]]
- [[http://www.shigen.nig.ac.jp/cvector/cvector.html The cloning vector collection]]
- [[http://www.neb.com/nebecomm/tech_reference/restriction_enzymes/dna_sequences_maps.asp New England Biolabs (NEB) DNA Sequences and Maps]]
- [[http://www.promega.com/vectors/cloning_vectors.htm Promega Cloning Vectors]]
- [[http://www.emdbiosciences.com/Products/BrowseProductsByCategory.asp?catid=1628 Novagen Vector Maps]]
- [[http://wishart.biology.ualberta.ca/PlasMapper/ PlasMapper Version 2.0 - automatically generates and annotates plasmid maps]]
- Vector sequences
- Transformation
- Production_of_heterologous_proteins_in_Escherichia_coli Production of heterologous proteins in Escherichia coli
- [[http://openwetware.org/wiki/Endy:Preparing_Antibiotic_Stocks Antibiotics]]
- [[http://openwetware.org/wiki/Synthetic_Biology:BioBricks/Part_fabrication Part fabrication]] ([[http://openwetware.org/wiki/Enzyme_selection_for_BioBricks_digest Enzyme selection for BioBricks digest]]!!)
- [[http://openwetware.org/wiki/BioBricks_construction_tutorial BioBricks construction tutorial]]
- [[http://openwetware.org/wiki/Silver:_BB_Strategy Fusion protein]]
- Glucose assay
- http://en.wikipedia.org/wiki/Blood_sugar Blood sugar (from Wikipedia)
- [[http://www.genengnews.com/articles/chtitem.aspx?tid=1624&chid=3 Glucose Measurement for Cell Culture]]
- [[http://www.sigmaaldrich.com/Area_of_Interest/Life_Science/Metabolomics/Product_Highlights/Enzymatic_Kits.html Glucose Assay Kits from SigmaAldrich]]
- [[http://www.bioassaysys.com/Order.html Glucose Assay Kit from QuantiChrom]]
- [[http://www.rpbiotech.com/Biochem_diag_kits/Glucose_Diagnostic_Kit.htm Biochemical glucose kit from rpbiotech]]
- [[http://www.anilinepharma.com/products.php?catg=ds&id=1 Glucose Meter from AnilinePharma]]
- Mammalian Gene Collection (MGC) Full-length cDNA clones
- [[http://mgc.nci.nih.gov/ at National Cancer Institute of NIH]]
- [[http://genome.ym.edu.tw/libres/MGC_clones/index.htm at Genome Research Center of NYMU]]
- [[http://www.ncbi.nlm.nih.gov/FLC/getmgc.cgi NCBI MGC retrieval]]
Dry-Lab Protocols
- http://serialbasics.free.fr/Serial_Cloner.html serial cloner
- Protein Fusion Design
- rcsC-envZ cimaera design
- Twin-Arginine Translocation Pathway Signal Peptide
- Lee et al., 2006. The Bacterial Twin-Arginine Translocation Pathway. Annu. Rev. Microbiol., 60, p373-395
General references
- http://www.neb.com/nebecomm/tech_reference/default.asp New England Biolab (NEB) technical references
