Revision as of 14:47, 21 October 2007

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Gels

Date and Reference	Description	Key	Gel
10th Aug 2007 (2)	Colony PCR after ligating phzM, phzS, DntR and Pu with the construction vectors 3/20G and 4/6B. Gel 1.	1.phzM 2.phzM 3.phzS 4.phzS 5.phzS 6.phzS 7.neg control 8.neg control 9.neg control
10th Aug 2007 (2)	Colony PCR after ligating phzM, phzS, DntR and Pu with the construction vectors 3/20G and 4/6B. Gel 2.	1.phzS 2.phzS 3.neg control 4.DntR 5.DntR 6.Pu 7.Pu 8.neg control 9.neg control 10.neg control 11.neg control

Date and Reference	Description	Key	Gel
13th Aug 2007 (4)	PCR of genes phzA→phzG, phzA→phzD, and phzD→phzG. Wells in the gel were made larger by putting tape on the combs in order to yield more DNA in gel extraction.	1A.phzA→phzG 1B.phzA→phzG 1C.phzA→phzG 2A.phzA→phzG 2B.phzA→phzD 2C.phzD→phzG

Date and Reference	Description	Key	Gel
17th Aug 2007 (2-4)	PstI digested minipreps of (m) and (s) in 4/6B and 3/20G vectors before and after the first round of site-directed mutagenesis. Gel 1.	1.-3.(m)+4/6B (PstI site mutated) 4.-6.(m)+3/20G (PstI site mutated) 7.-9.(s)+4/6B (1st PstI site mutated) 10.-12.(s)+3/20G (2nd PstI site mutated) 13.-15.(s)+4/6B (2nd PstI site mutated) 16.(s)+3/20G (1st PstI site mutated)
17th Aug 2007 (2-4)	PstI digested minipreps of (m) and (s) in 4/6B and 3/20G vectors before and after the first round of site-directed mutagenesis. Gel 2.	1.-2.(s)+3/20G (1st PstI site mutated) 3.(m)+4/6B (Before mutagenesis) 4.(m)+3/20G (Before mutagenesis) 5.(s)+4/6B (Before mutagenesis) 6.(s)+3/20G (Before mutagenesis)

Date and Reference	Description	Key
23rd Aug 2007	(s) minipreps in 4/6B and 3/20G run after the second round of site-directed mutagenesis.	1.-5.(s)+4/6B 6.-16.(s)+3/20G
23rd Aug 2007	PstI digested (s) minipreps in 4/6B and 3/20G vectors after the second round of site-directed mutagenesis.	1.-5.(s)+4/6B 6.-16.(s)+3/20G
23rd Aug 2007	Colony PCR with "Pr_Prefix" and "XylR_Suffix" primers from Lynsey's transformations with Pr+XylR miniprep DNA. Gel 1.	1.-7.colonies from the plate
23rd Aug 2007	Colony PCR with "Pr_Prefix" and "XylR_Suffix" primers from Lynsey's transformations with Pr+XylR miniprep DNA. Gel 2.	8.-12.colonies from the plate 13.neg control

Date and Reference	Description	Key	Gel
24th Aug 2007 (1)	These are the miniprepped plasmids from Pr+XylR in TOPO vector. The seven colonies gave the right size product from colony PCR but failed to give right size bands after miniprepping. Wait for sequencing results.	1.-7.colonies from Pr+XylR in TOPO transformations

Date and Reference	Description	Key	Gel
27th Aug 2007 (1)	pDntA in 3/20G and 4/6B vectors digested with Roche's PvuI restriction enzyme. Results do not match up with expected fragment sizes, thus performing a PCR with "VF2" and "VR" primers.	1.pDntA+3/20G 2.pDntA+4/6B

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@@ Line 52: / Line 52: @@
 |-
 |[[Glasgow/Wetlab/Week7#Monday 13th August 2007|13th Aug 2007 (4)]]
-|PCR of genes (*a→g*), (*a→d*), and (*d→g*). Wells in the gel were made larger by putting tape on the combs in order to yield more DNA in gel extraction.
+|PCR of genes phzA→phzG, phzA→phzD, and phzD→phzG. Wells in the gel were made larger by putting tape on the combs in order to yield more DNA in gel extraction.
-|'''1A.'''(*a→g*) <br>
+|'''1A.'''phzA→phzG <br>
-'''1B.'''(*a→g*) <br>
+'''1B.'''phzA→phzG <br>
-'''1C.'''(*a→g*) <br>
+'''1C.'''phzA→phzG <br>
-'''2A.'''(*a→g*) <br>
+'''2A.'''phzA→phzG <br>
-'''2B.'''(*a→d*) <br>
+'''2B.'''phzA→phzD <br>
-'''2C.'''(*d→g*) <br>
+'''2C.'''phzD→phzG <br>
 |[[Image:2007-08-13 12hr 43min.JPG|220px]]
 |}