Glasgow/DryReferences

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David Gilbert, Monika Heiner and Sebastian Lehrack "A Unifying Framework for Modelling and Analysing Biochemical Pathways Using Petri Nets". In proceedings Computational Methods in Systems Biology CMSB 2007, Springer-Verlag LNCS/LNBI Volume 4695, pp. 200-216., 2007. <br/>
+
References
 +
 
 +
[1] A. Smirnova, C. Dian, G. A. Leonard, S. McSweeney, D. Birse, and P. Brzezinski. Development
 +
of a bacterial biosensor for nitrotoluenes: the crystal structure of the transcriptional
 +
regulator dntr. J. Mol. Biol, 340:405–418, 2004.
 +
 
 +
[2] Jun Zhu and Stephen C. Winans. Autoinducer binding by the quorum-sensing regulator
 +
trar increases affinity for target promoters vitro and decreases trar turnover rates in whole
 +
cells. In Proc. Natl. Acad. Sci, pages 4832–4837, 1999.
 +
 
 +
[3] F. Lacroute and GS. Stent. Peptide chain growth of -galactosidase in escherichia coli. J
 +
Mol Biol., 35:165–173, 1968.
 +
 
 +
[4] Kyung Chae Jung, Ho Sung Rhee, Chi Hoon Park, and Yang Chul-Hak. Determination
 +
of the dissocation constants for recombinant c-myc. max. dna complexes: The inhibitory
 +
effect of linoleic acid on the dna-bindingstep. Biochem. Biophys. Res. Commun., 334:269–
 +
275, 2005.
 +
 
 +
[5] Kamalendu Nath and Arthur L. Koch. Protein degradation in escherichia coli. i. measurement
 +
of rapidly and slowly decaying components. J. Biol. Chem., 245:2889–2900, 1970.
 +
 
 +
[6] J. Parsons, B. Greenhagen, K. Shi, K. Calabrese, H. Robinson, and J. Ladner. Structural
 +
and functional analysis of the pyocyanin biosynthetic protein phzm from pseudomonas
 +
aeruginosa. Biochemistry, 2007.
 +
 
 +
[7] Yunxia Q. O’Malley, Maher Y. Abdalla, Michael L. McCormick, Krzysztof J. Reszka,
 +
Gerene M. Denning, and Bradley E. Britigan. Subcellular localization of Pseudomonas
 +
pyocyanin cytotoxicity in human lung epithelial cells. Am J Physiol Lung Cell Mol Physiol,
 +
284(2):L420–430, 2003.
 +
 
 +
[8] David Gilbert, Monika Heiner and Sebastian Lehrack "A Unifying Framework for Modelling and Analysing Biochemical Pathways Using Petri Nets". In proceedings Computational Methods in Systems Biology CMSB 2007, Springer-Verlag LNCS/LNBI Volume 4695, pp. 200-216., 2007. <br/>
D.T. Gillespie. Exact stochastic simulation of coupled chemical reactions.
D.T. Gillespie. Exact stochastic simulation of coupled chemical reactions.
The Journal of Physical Chemistry, 81(25):2340–2361, 1977. <br/>
The Journal of Physical Chemistry, 81(25):2340–2361, 1977. <br/>

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References

[1] A. Smirnova, C. Dian, G. A. Leonard, S. McSweeney, D. Birse, and P. Brzezinski. Development of a bacterial biosensor for nitrotoluenes: the crystal structure of the transcriptional regulator dntr. J. Mol. Biol, 340:405–418, 2004.

[2] Jun Zhu and Stephen C. Winans. Autoinducer binding by the quorum-sensing regulator trar increases affinity for target promoters vitro and decreases trar turnover rates in whole cells. In Proc. Natl. Acad. Sci, pages 4832–4837, 1999.

[3] F. Lacroute and GS. Stent. Peptide chain growth of -galactosidase in escherichia coli. J Mol Biol., 35:165–173, 1968.

[4] Kyung Chae Jung, Ho Sung Rhee, Chi Hoon Park, and Yang Chul-Hak. Determination of the dissocation constants for recombinant c-myc. max. dna complexes: The inhibitory effect of linoleic acid on the dna-bindingstep. Biochem. Biophys. Res. Commun., 334:269– 275, 2005.

[5] Kamalendu Nath and Arthur L. Koch. Protein degradation in escherichia coli. i. measurement of rapidly and slowly decaying components. J. Biol. Chem., 245:2889–2900, 1970.

[6] J. Parsons, B. Greenhagen, K. Shi, K. Calabrese, H. Robinson, and J. Ladner. Structural and functional analysis of the pyocyanin biosynthetic protein phzm from pseudomonas aeruginosa. Biochemistry, 2007.

[7] Yunxia Q. O’Malley, Maher Y. Abdalla, Michael L. McCormick, Krzysztof J. Reszka, Gerene M. Denning, and Bradley E. Britigan. Subcellular localization of Pseudomonas pyocyanin cytotoxicity in human lung epithelial cells. Am J Physiol Lung Cell Mol Physiol, 284(2):L420–430, 2003.

[8] David Gilbert, Monika Heiner and Sebastian Lehrack "A Unifying Framework for Modelling and Analysing Biochemical Pathways Using Petri Nets". In proceedings Computational Methods in Systems Biology CMSB 2007, Springer-Verlag LNCS/LNBI Volume 4695, pp. 200-216., 2007.
D.T. Gillespie. Exact stochastic simulation of coupled chemical reactions. The Journal of Physical Chemistry, 81(25):2340–2361, 1977.
D.J. Wilkinson. Stochastic Modelling for System Biology. CRC Press, New York, 1st Edition, 2006.

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