Glasgow/Wetlab/References

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[http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retrieve&db=PubMed&list_uids=16359854&dopt=AbstractPlus Galvao, T. C., de Lorenzo, V. 2006 Transcriptional Regulators a la Carte: Engineering New Specificities in Bacterial Regulatory Proteins  ''Current Opinion in Biotechnology''  17:34-42 '''PMID: 11679066''']
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Galvao, T. C., de Lorenzo, V. 2006 Transcriptional Regulators a la Carte: Engineering New Specificities in Bacterial Regulatory Proteins  ''Current Opinion in Biotechnology''  17:34-42 [http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retrieve&db=PubMed&list_uids=16359854&dopt=AbstractPlus '''PMID: 16359854''']
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[http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=search&term=Carbon%20Source-Dependent%20Inhibition%20of%20xyl%20Operon%20Expression%20of%20the%20''Pseudomonas%20Putida''%20TOL%20Plasmid Holtel, A., Marqués, S., Möhler, I., Jakubzik, U., Timmïs, K. N. 1994 Carbon Source-Dependent Inhibition of xyl Operon Expression of the ''Pseudomonas Putida'' TOL Plasmid ''Journal of Bacteriology'' 176:1773-1776 '''PMID:8132475''']
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Harayama, S., Leppik, R. A., Rekik, M, Mermod, N., Lehrbach, P. R., Reineke, W., Timmis N. K. 1986 Gene order of the TOL catabolic plasmid upper pathway operon and oxidation of both toluene and benzyl alcohol by the xylA product ''Journal of Bacteriology'' 167(2): 455–461 [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=212909 '''PMID: 3015870''']
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[http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retrieve&db=PubMed&list_uids=3169574&dopt=Citation Inouye, S., Nakazawa, A., Nakazawa, T. 1988 Nucleotide sequence of the regulatory gene xylR of the TOL plasmid from Pseudomonas putida ''Gene'' 66(2):301-6  '''PMID: 3169574]
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Holtel, A., Marqués, S., Möhler, I., Jakubzik, U., Timmïs, K. N. 1994 Carbon Source-Dependent Inhibition of xyl Operon Expression of the ''Pseudomonas Putida'' TOL Plasmid ''Journal of Bacteriology'' 176:1773-1776 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=search&term=Carbon%20Source-Dependent%20Inhibition%20of%20xyl%20Operon%20Expression%20of%20the%20 '''PMID: 8132475''']
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[http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=135200&rendertype=abstract Johnson, G. R., Jain, R. K., Spain, J. C. 2002 Origins of the 2,4-Dinitrotoluene Pathway ''Journal of Bacteriology'' 184:4219-4232 '''PMID: 12107140''']
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Inouye, S., Nakazawa, A., Nakazawa, T. 1988 Nucleotide sequence of the regulatory gene xylR of the TOL plasmid from Pseudomonas putida ''Gene'' 66(2):301-6  [http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retrieve&db=PubMed&list_uids=3169574&dopt=Citation '''PMID: 3169574]
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[http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=1074373 Lewenza, S., Falsafi, R. K., Winsor, G., Gooderham, W. J., McPhee, J. B., Brinkman., F. S. L., Hancock, R. E. W. 2005 Construction of a Mini-Tn5 luxCDABE Mutant Library in PA01: A Tool for Identifying Differentially Regulated Genes ''Genome Research'' 15:583-589 '''PMID: 15805499''']
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Johnson, G. R., Jain, R. K., Spain, J. C. 2002 Origins of the 2,4-Dinitrotoluene Pathway ''Journal of Bacteriology'' 184:4219-4232 [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=135200&rendertype=abstract  '''PMID: 12107140''']
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[http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=search&term=Mini-Tn5%20Transposon%20Derivatives%20for%20Insertion%20Mutageesis,%20Promoter%20Probing,%20and%20Chromosomal%20Insertion%20of%20Cloned%20DNA%20in%20Gram-Negative%20Eubacteria de Lorenzo, V., Herrero, M., Jakubzik, U>, Timmis, K. N. 1990 Mini-Tn5 Transposon Derivatives for Insertion Mutageesis, Promoter Probing, and Chromosomal Insertion of Cloned DNA in Gram-Negative Eubacteria ''Journal of Bacteriology 172:6568-6572 '''PMID:2172217''']
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Lewenza, S., Falsafi, R. K., Winsor, G., Gooderham, W. J., McPhee, J. B., Brinkman., F. S. L., Hancock, R. E. W. 2005 Construction of a Mini-Tn5 luxCDABE Mutant Library in PA01: A Tool for Identifying Differentially Regulated Genes ''Genome Research'' 15:583-589 [http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=1074373 '''PMID: 15805499''']
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[http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=search&term=Functional%20Analysis%20of%20Genes%20for%20Biosynthesis%20of%20Pyocyanin%20and%20Phenazine-1-Carboxamide%20from%20Pseudomonas%20Aeruginosa Mavrodi, D. V., Bonsall, R. F., Delaney, S. M., Soule, M. J., Phillips, G., Thomashow, L. S. 2001 Functional Analysis of Genes for Biosynthesis of Pyocyanin and Phenazine-1-Carboxamide from Pseudomonas Aeruginosa PA01 ''Journal of Bacteriology'' 183:6454-6465 '''PMID:11591691''']
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de Lorenzo, V., Herrero, M., Jakubzik, U>, Timmis, K. N. 1990 Mini-Tn5 Transposon Derivatives for Insertion Mutageesis, Promoter Probing, and Chromosomal Insertion of Cloned DNA in Gram-Negative Eubacteria ''Journal of Bacteriology 172:6568-6572 [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=search&term=Mini-Tn5%20Transposon%20Derivatives%20for%20Insertion%20Mutageesis,%20Promoter%20Probing,%20and%20Chromosomal%20Insertion%20of%20Cloned%20DNA%20in%20Gram-Negative%20Eubacteria '''PMID:2172217''']
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[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=14623041&ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum  Paitan, Y., Biran, D., Biran., I, Shechter, N., Babai, R., Rishpon, J., Ron, E. Z. 2003 On-line and in situ biosensors for monitoring environmental pollution ''Biotechnology advances'' 22:27-33 '''PMID: 14623041''']
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Mavrodi, D. V., Bonsall, R. F., Delaney, S. M., Soule, M. J., Phillips, G., Thomashow, L. S. 2001 Functional Analysis of Genes for Biosynthesis of Pyocyanin and Phenazine-1-Carboxamide from Pseudomonas Aeruginosa PA01 ''Journal of Bacteriology'' 183:6454-6465[http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=search&term=Functional%20Analysis%20of%20Genes%20for%20Biosynthesis%20of%20Pyocyanin%20and%20Phenazine-1-Carboxamide%20from%20Pseudomonas%20Aeruginosa '''PMID:11591691''']
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[http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=search&term=17253782 Parsons, J. F., Greenhagen, B. T., Shi, K., Calabrese, K., Robinson, H., Ladner, J. E. 2007 Structural and Functional Analysis of the Pyocyanin Biosynthetic Protein PhzM from ''Pseudomonas aeruginosa'' ''Biochemistry'' 46:1821-1828 '''PMID:17253782''']
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Paitan, Y., Biran, D., Biran., I, Shechter, N., Babai, R., Rishpon, J., Ron, E. Z. 2003 On-line and in situ biosensors for monitoring environmental pollution  ''Biotechnology advances'' 22:27-33
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[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=14623041&ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum  '''PMID: 14623041''']
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[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=17761264&ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum Rogers, K. R., 2005 Recent advances in biosensor techniques for environmental monitoring ''Analytica Chimica Acta '' 568:222-231 '''PMID:17761264''']
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Parsons, J. F., Greenhagen, B. T., Shi, K., Calabrese, K., Robinson, H., Ladner, J. E. 2007 Structural and Functional Analysis of the Pyocyanin Biosynthetic Protein PhzM from ''Pseudomonas aeruginosa'' ''Biochemistry'' 46:1821-1828
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[http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=search&term=17253782 '''PMID:17253782''']
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[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=17532203&ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum Ron, E. Z. 2007 Biosensing environmental pollution ''Current Opinion in Biotechnology'' 18:252-258 '''PMID: 17532203''']
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Rabaey, K., Boon, N., Hofte, M., Verstraete, W. 2005 Microbial Phenazine Production Enhances Electron Transfer in Biofuel Cells ''Environ. Sci. Technol.'' 39, 3401-3408 [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=15926596&ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum '''PMID: 15926596''']
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[http://jb.asm.org/cgi/content/abstract/175/6/1596 Shingler, V., Bartilson, M., Moore, T. 1993 Cloning and Nucleotide Sequence  of the Gene Encoding the Positive Regulator (DmpR) of the Phenol Catabolic Pathway Encoded by pVI150 and Identification of DmpR as a Member of the NtrC Family of Transcriptional Activators ''Journal of Bacteriology'' 175:1596-1604 '''PMID: 8449869''']
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Rogers, K. R., 2005 Recent advances in biosensor techniques for environmental monitoring ''Analytica Chimica Acta '' 568:222-231
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[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=17761264&ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum  '''PMID:17761264''']
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[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=1781682&ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum Spanggord, R. J., Spain, J. C., Nishino, S. F., Mortelmans, K. F. 1991 Biodegradation of 2,4-dinitrotoluene by a Pseudomonas sp. ''Applied Environmental Mircobiology'' 57:3200-3205 '''PMID:1781682''']
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Ron, E. Z. 2007 Biosensing environmental pollution ''Current Opinion in Biotechnology'' 18:252-258
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[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=17532203&ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum '''PMID: 17532203''']
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[http://aem.asm.org/cgi/content/abstract/64/3/1006 Willardson, B. M., Wilkins, J. F., Rand, T. A., Schupp, J. M., Hill, K. K., Keim, P., Jackson, P. J. 1998 Development and Testing of a Bacterial Biosensor for Toluene-Based Environmental Contaminants ''Applied and Environmental Microbiology'' 64:1006-1012 '''PMID: 9501440''']
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Shingler, V., Bartilson, M., Moore, T. 1993 Cloning and Nucleotide Sequence  of the Gene Encoding the Positive Regulator (DmpR) of the Phenol Catabolic Pathway Encoded by pVI150 and Identification of DmpR as a Member of the NtrC Family of Transcriptional Activators ''Journal of Bacteriology'' 175:1596-1604
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[http://jb.asm.org/cgi/content/abstract/175/6/1596 '''PMID: 8449869''']
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[http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=search&term=Generation%20of%20Novel%20Bacterial%20Regulatory%20Proteins%20that%20Detect%20Priority%20Pollutant%20Phenols  Wise, A. A., Kuske, C. R. 2000 Generation of Novel Bacterial Regulatory Proteins that Detect Priority Pollutant Phenols ''Applied and Environmental Microbiology 66:163 '''PMID: 10618218''']
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Shingler, V., Moore, T. 1994 Sensing of aromatic compounds by the DmpR transcriptional activator of phenol-catabolizing Pseudomonas sp. strain CF600 ''Jounal of Bacteriology'' 176(6):1555-60 [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=8132448&ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum '''PMID: 8132448''']
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Spanggord, R. J., Spain, J. C., Nishino, S. F., Mortelmans, K. F. 1991 Biodegradation of 2,4-dinitrotoluene by a Pseudomonas sp. ''Applied Environmental Mircobiology'' 57:3200-3205
 +
[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=1781682&ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum '''PMID:1781682''']
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Tran, L. P., Szabo, L., Orosz, L., Sik, T., Holczinger, A. 1998 Construction of a single-copy integration
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vector and its use to study gene expression in ''Bacillus licheniformis'' ''Microbiology'' 144, 2573–2578
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[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=9782506&ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum '''PMID: 9782506''']
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Willardson, B. M., Wilkins, J. F., Rand, T. A., Schupp, J. M., Hill, K. K., Keim, P., Jackson, P. J. 1998 Development and Testing of a Bacterial Biosensor for Toluene-Based Environmental Contaminants ''Applied and Environmental Microbiology'' 64:1006-1012
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[http://aem.asm.org/cgi/content/abstract/64/3/1006 '''PMID: 9501440''']
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Wise, A. A., Kuske, C. R. 2000 Generation of Novel Bacterial Regulatory Proteins that Detect Priority Pollutant Phenols ''Applied and Environmental Microbiology 66:163  
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[http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=search&term=Generation%20of%20Novel%20Bacterial%20Regulatory%20Proteins%20that%20Detect%20Priority%20Pollutant%20Phenols  '''PMID: 10618218''']
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Worsey M. J, Williams P. A. 1975 Metabolism of toluene and xylenes by Pseudomonas (putida (arvilla) mt-2: evidence for a new function of the TOL plasmid ''Jounal of Bacteriology'' 124(1):7-13
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[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=1176436&ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum '''PMID: 1176436''']
</ol>
</ol>
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Latest revision as of 15:47, 26 October 2007

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References

  1. Galvao, T. C., de Lorenzo, V. 2006 Transcriptional Regulators a la Carte: Engineering New Specificities in Bacterial Regulatory Proteins Current Opinion in Biotechnology 17:34-42 PMID: 16359854
  2. Harayama, S., Leppik, R. A., Rekik, M, Mermod, N., Lehrbach, P. R., Reineke, W., Timmis N. K. 1986 Gene order of the TOL catabolic plasmid upper pathway operon and oxidation of both toluene and benzyl alcohol by the xylA product Journal of Bacteriology 167(2): 455–461 PMID: 3015870
  3. Holtel, A., Marqués, S., Möhler, I., Jakubzik, U., Timmïs, K. N. 1994 Carbon Source-Dependent Inhibition of xyl Operon Expression of the Pseudomonas Putida TOL Plasmid Journal of Bacteriology 176:1773-1776 PMID: 8132475
  4. Inouye, S., Nakazawa, A., Nakazawa, T. 1988 Nucleotide sequence of the regulatory gene xylR of the TOL plasmid from Pseudomonas putida Gene 66(2):301-6 PMID: 3169574
  5. Johnson, G. R., Jain, R. K., Spain, J. C. 2002 Origins of the 2,4-Dinitrotoluene Pathway Journal of Bacteriology 184:4219-4232 PMID: 12107140
  6. Lewenza, S., Falsafi, R. K., Winsor, G., Gooderham, W. J., McPhee, J. B., Brinkman., F. S. L., Hancock, R. E. W. 2005 Construction of a Mini-Tn5 luxCDABE Mutant Library in PA01: A Tool for Identifying Differentially Regulated Genes Genome Research 15:583-589 PMID: 15805499
  7. de Lorenzo, V., Herrero, M., Jakubzik, U>, Timmis, K. N. 1990 Mini-Tn5 Transposon Derivatives for Insertion Mutageesis, Promoter Probing, and Chromosomal Insertion of Cloned DNA in Gram-Negative Eubacteria Journal of Bacteriology 172:6568-6572 PMID:2172217
  8. Mavrodi, D. V., Bonsall, R. F., Delaney, S. M., Soule, M. J., Phillips, G., Thomashow, L. S. 2001 Functional Analysis of Genes for Biosynthesis of Pyocyanin and Phenazine-1-Carboxamide from Pseudomonas Aeruginosa PA01 Journal of Bacteriology 183:6454-6465PMID:11591691
  9. Paitan, Y., Biran, D., Biran., I, Shechter, N., Babai, R., Rishpon, J., Ron, E. Z. 2003 On-line and in situ biosensors for monitoring environmental pollution Biotechnology advances 22:27-33 PMID: 14623041
  10. Parsons, J. F., Greenhagen, B. T., Shi, K., Calabrese, K., Robinson, H., Ladner, J. E. 2007 Structural and Functional Analysis of the Pyocyanin Biosynthetic Protein PhzM from Pseudomonas aeruginosa Biochemistry 46:1821-1828 PMID:17253782
  11. Rabaey, K., Boon, N., Hofte, M., Verstraete, W. 2005 Microbial Phenazine Production Enhances Electron Transfer in Biofuel Cells Environ. Sci. Technol. 39, 3401-3408 PMID: 15926596
  12. Rogers, K. R., 2005 Recent advances in biosensor techniques for environmental monitoring Analytica Chimica Acta 568:222-231 PMID:17761264
  13. Ron, E. Z. 2007 Biosensing environmental pollution Current Opinion in Biotechnology 18:252-258 PMID: 17532203
  14. Shingler, V., Bartilson, M., Moore, T. 1993 Cloning and Nucleotide Sequence of the Gene Encoding the Positive Regulator (DmpR) of the Phenol Catabolic Pathway Encoded by pVI150 and Identification of DmpR as a Member of the NtrC Family of Transcriptional Activators Journal of Bacteriology 175:1596-1604 PMID: 8449869
  15. Shingler, V., Moore, T. 1994 Sensing of aromatic compounds by the DmpR transcriptional activator of phenol-catabolizing Pseudomonas sp. strain CF600 Jounal of Bacteriology 176(6):1555-60 PMID: 8132448
  16. Spanggord, R. J., Spain, J. C., Nishino, S. F., Mortelmans, K. F. 1991 Biodegradation of 2,4-dinitrotoluene by a Pseudomonas sp. Applied Environmental Mircobiology 57:3200-3205 PMID:1781682
  17. Tran, L. P., Szabo, L., Orosz, L., Sik, T., Holczinger, A. 1998 Construction of a single-copy integration vector and its use to study gene expression in Bacillus licheniformis Microbiology 144, 2573–2578 PMID: 9782506
  18. Willardson, B. M., Wilkins, J. F., Rand, T. A., Schupp, J. M., Hill, K. K., Keim, P., Jackson, P. J. 1998 Development and Testing of a Bacterial Biosensor for Toluene-Based Environmental Contaminants Applied and Environmental Microbiology 64:1006-1012 PMID: 9501440
  19. Wise, A. A., Kuske, C. R. 2000 Generation of Novel Bacterial Regulatory Proteins that Detect Priority Pollutant Phenols Applied and Environmental Microbiology 66:163 PMID: 10618218
  20. Worsey M. J, Williams P. A. 1975 Metabolism of toluene and xylenes by Pseudomonas (putida (arvilla) mt-2: evidence for a new function of the TOL plasmid Jounal of Bacteriology 124(1):7-13 PMID: 1176436
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