Glasgow/DryWeek1
From 2007.igem.org
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| - | !align=center|[ | + | !align=center|[[Image:Uog.jpg]] || [[Glasgow|<font face=georgia color=#3366CC size=4>Back To <br> Glasgow's <br> Main Page</font>]]|| [[Glasgow/Wetlab|<font face=georgia color=#3366CC size=4>Go To <br> Glasgow's <br> Wetlab Log</font>]] |
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| - | |[https://2007.igem.org/Glasgow/DryTutorials <font face=georgia color=# | + | |[https://2007.igem.org/Glasgow/Modeling <font face=georgia color=#3366CC size=5><b>Modelling</b></font>] |
| + | |[https://2007.igem.org/Glasgow/DryLog <font face=georgia color=#3366CC size=5><b>Log</b></font>] | ||
| + | |[https://2007.igem.org/Glasgow/DryTutorials <font face=georgia color=#3366CC size=5><b>Tutorials</b></font>] | ||
|[https://2007.igem.org/Glasgow/DryReferences <font face=georgia color=#3366CC size=5><b>References</b></font>] | |[https://2007.igem.org/Glasgow/DryReferences <font face=georgia color=#3366CC size=5><b>References</b></font>] | ||
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After a brief re-introduction to the Laboratory and our project proposal, we outlined a [[Glasgow/Phases| 6-PHASE]] approach to guide our practice over the summer. | After a brief re-introduction to the Laboratory and our project proposal, we outlined a [[Glasgow/Phases| 6-PHASE]] approach to guide our practice over the summer. | ||
| - | From here the Modellers began working on basic Matlab modelling tutorials, designed by [[User:gux|Xu Gu]], to allow all modellers to reach a satisfactory ability. By the end of the day we had completed a number of [http://en.wikipedia.org/wiki/Law_of_mass_action Mass-action] programs using the ode45 funtion and grasped the translation from basic notaion into Substrate, Enzyme and S/E-complex notation. | + | From here the Modellers began working on basic Matlab modelling tutorials, designed by [[User:gux|Xu Gu]], to allow all modellers to reach a satisfactory ability. By the end of the day we had completed a number of [http://en.wikipedia.org/wiki/Law_of_mass_action Mass-action] programs using the ode45 funtion and grasped the translation from basic notaion into [http://en.wikipedia.org/wiki/Substrate_%28biochemistry%29 Substrate], [http://en.wikipedia.org/wiki/Enzyme Enzyme] and S/E-complex notation. |
=== 03/07 === | === 03/07 === | ||
| - | We developed our modelling techniques by programming responses to basic [http://en.wikipedia.org/wiki/Metabolic_pathway metabolic] and [http://en.wikipedia.org/wiki/Cell_signaling signalling] pathways. We then learnt more precise techniques of modelling, e.g. accuracy and tolerace variance and noting parameters. We then covered | + | We developed our modelling techniques by programming responses to basic [http://en.wikipedia.org/wiki/Metabolic_pathway metabolic] and [http://en.wikipedia.org/wiki/Cell_signaling signalling] pathways. We then learnt more precise techniques of modelling, e.g. accuracy and tolerace variance and noting parameters. We then covered if while and switch functions. |
=== 04/07 === | === 04/07 === | ||
| - | We were introduced to the 'Nested Functions' to allow for simpler programming, and the basic ideas behind Sensitivity of output due to a range of possible values of varying constants. | + | We were introduced to the [http://en.wikipedia.org/wiki/Nested_function 'Nested Functions'] to allow for simpler programming, and the basic ideas behind Sensitivity of output due to a range of possible values of varying constants. |
| - | In the afternoon, all modellers were shown some Wetlab techniques for the sake of a more thorough understanding of the processes involved. | + | In the afternoon, all modellers were shown some [[Glasgow/Wetlab|Wetlab |
| + | ]] techniques for the sake of a more thorough understanding of the processes involved. | ||
| - | Our experiment was to extract plasmids from a number of different bacterial cultures. | + | Our experiment was to extract [http://en.wikipedia.org/wiki/Plasmids plasmids] from a number of different bacterial [[Glasgow/Wetlab/Week1|cultures |
| + | ]]. | ||
=== 05/07 === | === 05/07 === | ||
| - | + | The end of week one. Feels like we did no practical work at all. But things are about to heet up... | |
| + | <br> | ||
| + | [[Glasgow/DryWeek2|<font face=georgia color=#3366CC size=4>Next <br> Week</font>]] | ||
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{|cellspacing="6px" cellpadding="16" border="0" width="100%" | {|cellspacing="6px" cellpadding="16" border="0" width="100%" | ||
|- align=center | |- align=center | ||
| - | |[https://2007.igem.org/Glasgow/DryTutorials <font face=georgia color=# | + | |[https://2007.igem.org/Glasgow/Modeling <font face=georgia color=#3366CC size=5><b>Modelling</b></font>] |
| + | |[https://2007.igem.org/Glasgow/DryLog <font face=georgia color=#3366CC size=5><b>Log</b></font>] | ||
| + | |[https://2007.igem.org/Glasgow/DryTutorials <font face=georgia color=#3366CC size=5><b>Tutorials</b></font>] | ||
|[https://2007.igem.org/Glasgow/DryReferences <font face=georgia color=#3366CC size=5><b>References</b></font>] | |[https://2007.igem.org/Glasgow/DryReferences <font face=georgia color=#3366CC size=5><b>References</b></font>] | ||
| - | + | ||
|} | |} | ||
Latest revision as of 17:13, 22 October 2007
 | Back To Glasgow's Main Page | Go To Glasgow's Wetlab Log |
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| Modelling | Log | Tutorials | References |
Contents |
Week 1
02/07
After a brief re-introduction to the Laboratory and our project proposal, we outlined a 6-PHASE approach to guide our practice over the summer.
From here the Modellers began working on basic Matlab modelling tutorials, designed by Xu Gu, to allow all modellers to reach a satisfactory ability. By the end of the day we had completed a number of [http://en.wikipedia.org/wiki/Law_of_mass_action Mass-action] programs using the ode45 funtion and grasped the translation from basic notaion into [http://en.wikipedia.org/wiki/Substrate_%28biochemistry%29 Substrate], [http://en.wikipedia.org/wiki/Enzyme Enzyme] and S/E-complex notation.
03/07
We developed our modelling techniques by programming responses to basic [http://en.wikipedia.org/wiki/Metabolic_pathway metabolic] and [http://en.wikipedia.org/wiki/Cell_signaling signalling] pathways. We then learnt more precise techniques of modelling, e.g. accuracy and tolerace variance and noting parameters. We then covered if while and switch functions.
04/07
We were introduced to the [http://en.wikipedia.org/wiki/Nested_function 'Nested Functions'] to allow for simpler programming, and the basic ideas behind Sensitivity of output due to a range of possible values of varying constants.
In the afternoon, all modellers were shown some Wetlab techniques for the sake of a more thorough understanding of the processes involved.
Our experiment was to extract [http://en.wikipedia.org/wiki/Plasmids plasmids] from a number of different bacterial cultures .
05/07
The end of week one. Feels like we did no practical work at all. But things are about to heet up...
Next
Week
| Modelling | Log | Tutorials | References |
