Glasgow/DryWeek1

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The end of week one. Feels like we did no practical work at all. But things are about to heet up...
The end of week one. Feels like we did no practical work at all. But things are about to heet up...
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Latest revision as of 17:13, 22 October 2007

Uog.jpg Back To
Glasgow's
Main Page
Go To
Glasgow's
Wetlab Log

Modelling Log Tutorials References

Contents

Week 1

02/07

After a brief re-introduction to the Laboratory and our project proposal, we outlined a 6-PHASE approach to guide our practice over the summer.

From here the Modellers began working on basic Matlab modelling tutorials, designed by Xu Gu, to allow all modellers to reach a satisfactory ability. By the end of the day we had completed a number of [http://en.wikipedia.org/wiki/Law_of_mass_action Mass-action] programs using the ode45 funtion and grasped the translation from basic notaion into [http://en.wikipedia.org/wiki/Substrate_%28biochemistry%29 Substrate], [http://en.wikipedia.org/wiki/Enzyme Enzyme] and S/E-complex notation.

03/07

We developed our modelling techniques by programming responses to basic [http://en.wikipedia.org/wiki/Metabolic_pathway metabolic] and [http://en.wikipedia.org/wiki/Cell_signaling signalling] pathways. We then learnt more precise techniques of modelling, e.g. accuracy and tolerace variance and noting parameters. We then covered if while and switch functions.

04/07

We were introduced to the [http://en.wikipedia.org/wiki/Nested_function 'Nested Functions'] to allow for simpler programming, and the basic ideas behind Sensitivity of output due to a range of possible values of varying constants.

In the afternoon, all modellers were shown some Wetlab techniques for the sake of a more thorough understanding of the processes involved.

Our experiment was to extract [http://en.wikipedia.org/wiki/Plasmids plasmids] from a number of different bacterial cultures .

05/07

The end of week one. Feels like we did no practical work at all. But things are about to heet up...
Next
Week


Modelling Log Tutorials References