Glasgow/DryWeek1

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< Glasgow(Difference between revisions)
(Week 1)
 
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!align=center|[https://2007.igem.org/Glasgow https://static.igem.org/mediawiki/2007/thumb/c/cc/Uog.jpg/50px-Uog.jpg] ||  [[Glasgow|<font face=georgia color=#3366CC size=4>Back To <br> Glasgow's <br> Main Page</font>]] || [[Glasgow/Drylab_full|<font face=georgia color=#99CCFF size=4>Back To <br> Glasgow's <br> Drylab's Log</font>]]
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!align=center|[[Image:Uog.jpg]] ||  [[Glasgow|<font face=georgia color=#3366CC size=4>Back To <br> Glasgow's <br> Main Page</font>]]|| [[Glasgow/Wetlab|<font face=georgia color=#3366CC size=4>Go To <br> Glasgow's <br> Wetlab Log</font>]]
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{|cellspacing="6px" cellpadding="16" border="0" width="100%"
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|[https://2007.igem.org/Glasgow/DryTutorials <font face=georgia color=#99CCFF size=5><b>Tutorials</b></font>]
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|[https://2007.igem.org/Glasgow/Modeling <font face=georgia color=#3366CC size=5><b>Modelling</b></font>]
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|[https://2007.igem.org/Glasgow/DryLog <font face=georgia color=#3366CC  size=5><b>Log</b></font>]
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|[https://2007.igem.org/Glasgow/DryTutorials <font face=georgia color=#3366CC size=5><b>Tutorials</b></font>]
|[https://2007.igem.org/Glasgow/DryReferences <font face=georgia color=#3366CC size=5><b>References</b></font>]
|[https://2007.igem.org/Glasgow/DryReferences <font face=georgia color=#3366CC size=5><b>References</b></font>]
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After a brief re-introduction to the Laboratory and our project proposal, we outlined a [[Glasgow/Phases| 6-PHASE]] approach to guide our practice over the summer.
After a brief re-introduction to the Laboratory and our project proposal, we outlined a [[Glasgow/Phases| 6-PHASE]] approach to guide our practice over the summer.
-
From here the Modellers began working on basic Matlab modelling tutorials, designed by [[User:gux|Xu Gu]], to allow all modellers to reach a satisfactory ability. By the end of the day we had completed a number of [http://en.wikipedia.org/wiki/Law_of_mass_action Mass-action] programs using the ode45 funtion and grasped the translation from basic notaion into Substrate, Enzyme and S/E-complex notation.
+
From here the Modellers began working on basic Matlab modelling tutorials, designed by [[User:gux|Xu Gu]], to allow all modellers to reach a satisfactory ability. By the end of the day we had completed a number of [http://en.wikipedia.org/wiki/Law_of_mass_action Mass-action] programs using the ode45 funtion and grasped the translation from basic notaion into [http://en.wikipedia.org/wiki/Substrate_%28biochemistry%29 Substrate], [http://en.wikipedia.org/wiki/Enzyme Enzyme] and S/E-complex notation.
=== 03/07 ===
=== 03/07 ===
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We developed our modelling techniques by programming responses to basic [http://en.wikipedia.org/wiki/Metabolic_pathway metabolic] and [http://en.wikipedia.org/wiki/Cell_signaling signalling]  pathways. We then  learnt more precise techniques of modelling, e.g. accuracy and tolerace variance and noting parameters. We then covered Loop and Switch functions.
+
We developed our modelling techniques by programming responses to basic [http://en.wikipedia.org/wiki/Metabolic_pathway metabolic] and [http://en.wikipedia.org/wiki/Cell_signaling signalling]  pathways. We then  learnt more precise techniques of modelling, e.g. accuracy and tolerace variance and noting parameters. We then covered if while and switch functions.
=== 04/07 ===
=== 04/07 ===
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We were introduced to the 'Nested Functions' to allow for simpler programming, and the basic ideas behind Sensitivity of output due to a range of possible values of varying constants.
+
We were introduced to the [http://en.wikipedia.org/wiki/Nested_function 'Nested Functions'] to allow for simpler programming, and the basic ideas behind Sensitivity of output due to a range of possible values of varying constants.
-
In the afternoon, all modellers were shown some Wetlab techniques for the sake of a more thorough understanding of the processes involved.
+
In the afternoon, all modellers were shown some [[Glasgow/Wetlab|Wetlab
 +
]] techniques for the sake of a more thorough understanding of the processes involved.
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Our experiment was to extract plasmids from a number of different bacterial cultures.
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Our experiment was to extract [http://en.wikipedia.org/wiki/Plasmids plasmids] from a number of different bacterial [[Glasgow/Wetlab/Week1|cultures
 +
]].
=== 05/07 ===
=== 05/07 ===
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blank
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The end of week one. Feels like we did no practical work at all. But things are about to heet up...
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<br>
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[[Glasgow/DryWeek2|<font face=georgia color=#3366CC size=4>Next <br>  Week</font>]]
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{|cellspacing="6px" cellpadding="16" border="0" width="100%"
{|cellspacing="6px" cellpadding="16" border="0" width="100%"
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|[https://2007.igem.org/Glasgow/DryTutorials <font face=georgia color=#99CCFF size=5><b>Tutorials</b></font>]
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|[https://2007.igem.org/Glasgow/Modeling <font face=georgia color=#3366CC size=5><b>Modelling</b></font>]
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|[https://2007.igem.org/Glasgow/DryLog <font face=georgia color=#3366CC  size=5><b>Log</b></font>]
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|[https://2007.igem.org/Glasgow/DryTutorials <font face=georgia color=#3366CC size=5><b>Tutorials</b></font>]
|[https://2007.igem.org/Glasgow/DryReferences <font face=georgia color=#3366CC size=5><b>References</b></font>]
|[https://2007.igem.org/Glasgow/DryReferences <font face=georgia color=#3366CC size=5><b>References</b></font>]
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|[https://2007.igem.org/Glasgow/DryResources <font face=georgia color=#99CCFF size=5><b>Resources</b></font>]
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Latest revision as of 17:13, 22 October 2007

Uog.jpg Back To
Glasgow's
Main Page
Go To
Glasgow's
Wetlab Log

Modelling Log Tutorials References

Contents

Week 1

02/07

After a brief re-introduction to the Laboratory and our project proposal, we outlined a 6-PHASE approach to guide our practice over the summer.

From here the Modellers began working on basic Matlab modelling tutorials, designed by Xu Gu, to allow all modellers to reach a satisfactory ability. By the end of the day we had completed a number of [http://en.wikipedia.org/wiki/Law_of_mass_action Mass-action] programs using the ode45 funtion and grasped the translation from basic notaion into [http://en.wikipedia.org/wiki/Substrate_%28biochemistry%29 Substrate], [http://en.wikipedia.org/wiki/Enzyme Enzyme] and S/E-complex notation.

03/07

We developed our modelling techniques by programming responses to basic [http://en.wikipedia.org/wiki/Metabolic_pathway metabolic] and [http://en.wikipedia.org/wiki/Cell_signaling signalling] pathways. We then learnt more precise techniques of modelling, e.g. accuracy and tolerace variance and noting parameters. We then covered if while and switch functions.

04/07

We were introduced to the [http://en.wikipedia.org/wiki/Nested_function 'Nested Functions'] to allow for simpler programming, and the basic ideas behind Sensitivity of output due to a range of possible values of varying constants.

In the afternoon, all modellers were shown some Wetlab techniques for the sake of a more thorough understanding of the processes involved.

Our experiment was to extract [http://en.wikipedia.org/wiki/Plasmids plasmids] from a number of different bacterial cultures .

05/07

The end of week one. Feels like we did no practical work at all. But things are about to heet up...
Next
Week


Modelling Log Tutorials References