Glasgow/DryWeek3
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| - | !align=center|[ | + | !align=center|[[Image:Uog.jpg]] || [[Glasgow|<font face=georgia color=#3366CC size=4>Back To <br> Glasgow's <br> Main Page</font>]]|| [[Glasgow/Wetlab|<font face=georgia color=#3366CC size=4>Go To <br> Glasgow's <br> Wetlab Log</font>]] |
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| - | |[https://2007.igem.org/Glasgow/DryTutorials <font face=georgia color=# | + | |[https://2007.igem.org/Glasgow/Modeling <font face=georgia color=#3366CC size=5><b>Modelling</b></font>] |
| + | |[https://2007.igem.org/Glasgow/DryLog <font face=georgia color=#3366CC size=5><b>Log</b></font>] | ||
| + | |[https://2007.igem.org/Glasgow/DryTutorials <font face=georgia color=#3366CC size=5><b>Tutorials</b></font>] | ||
|[https://2007.igem.org/Glasgow/DryReferences <font face=georgia color=#3366CC size=5><b>References</b></font>] | |[https://2007.igem.org/Glasgow/DryReferences <font face=georgia color=#3366CC size=5><b>References</b></font>] | ||
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== Week 3 == | == Week 3 == | ||
=== 16/07 === | === 16/07 === | ||
| - | Glasgow Bank Holiday. | + | [http://www.glasgow.gov.uk/ Glasgow ]Bank Holiday. |
=== 17/07 === | === 17/07 === | ||
| - | We were given a brief introduction to Bionessie and SBML. Also we be begun to get to grips with Global Sensitivity analysis. | + | We were given a brief introduction to [http://www.bionessie.com Bionessie] and [http://sbml.org/ SBML]. Also we be begun to get to grips with [[Media:Minicap.pdf| Global Sensitivity]] analysis. |
=== 18/07 === | === 18/07 === | ||
| - | A brief overview of SimBiology was given to the drylab by Gary. Martina and Rachel continued learning about Stochastic | + | A brief overview of [http://www.mathworks.com/products/simbiology/ SimBiology] was given to the drylab by [[User:GaryGray| Gary]]. [[User:Freestym| Martina]] and [[User:Rach| Rachel]] continued learning about [http://en.wikipedia.org/wiki/Stochastic_modelling Stochastic Modelling], while the rest of the team were working on [[Media:Minicap.pdf| Sensitivity Analysis]]. |
=== 19/07 === | === 19/07 === | ||
| - | A presentation was given to both, the wetlab and the | + | A presentation was given to both, the [[Glasgow/Wetlab| wetlab]] and the [[Glasgow/Drylab_full| Drylab]], about the Full Text Fetcher programme which, will help to search and retrive research articles. |
| - | The Stochastic Simulation Algorithm (Gillespie's algorithm) is yet ready in the code to run some stochastics simulations on the | + | The Stochastic Simulation Algorithm [http://en.wikipedia.org/wiki/Gillespie_algorithm (Gillespie's algorithm)] is yet ready in the code to run some stochastics simulations on the [http://en.wikipedia.org/wiki/Michaelis-Menten Michaelis-Menten] system. |
=== 20/07 === | === 20/07 === | ||
| - | Today we realized that, we missed few important details in our model 1. All morning was like one big mess. Everybody gave their ideas how things should be sorted. | + | Today we realized that, we missed few important details in our [[Trial_model_for_the_PDntRS_promoter| model 1]]. All morning was like one big mess. Everybody gave their ideas how things should be sorted. |
| - | Eventually, we settled our brainstormed ideas on board and decided to leave simulations for Monday because new parameter hunt for model 1.2 was about to begin… | + | Eventually, we settled our brainstormed ideas on board and decided to leave simulations for Monday because new parameter hunt for [[Trial_model_for_the_PDntRS_promoter| model 1.2]] was about to begin… |
| - | Stochastic's work keeps on fitting the fano factor! | + | Stochastic's work keeps on fitting the [http://en.wikipedia.org/wiki/Fano_factor fano factor!] |
| + | <br> | ||
| + | {| valign=top cellpadding=3 | ||
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| + | ![[Glasgow/DryWeek1|<font face=georgia color=#3366CC size=4>Previous <br> Week</font>]] || [[Glasgow/DryWeek4|<font face=georgia color=#3366CC size=4>Next <br> Week</font>]] | ||
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{|cellspacing="6px" cellpadding="16" border="0" width="100%" | {|cellspacing="6px" cellpadding="16" border="0" width="100%" | ||
|- align=center | |- align=center | ||
| - | |[https://2007.igem.org/Glasgow/DryTutorials <font face=georgia color=# | + | |[https://2007.igem.org/Glasgow/Modeling <font face=georgia color=#3366CC size=5><b>Modelling</b></font>] |
| + | |[https://2007.igem.org/Glasgow/DryLog <font face=georgia color=#3366CC size=5><b>Log</b></font>] | ||
| + | |[https://2007.igem.org/Glasgow/DryTutorials <font face=georgia color=#3366CC size=5><b>Tutorials</b></font>] | ||
|[https://2007.igem.org/Glasgow/DryReferences <font face=georgia color=#3366CC size=5><b>References</b></font>] | |[https://2007.igem.org/Glasgow/DryReferences <font face=georgia color=#3366CC size=5><b>References</b></font>] | ||
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|} | |} | ||
Latest revision as of 17:13, 22 October 2007
 | Back To Glasgow's Main Page | Go To Glasgow's Wetlab Log |
|---|
| Modelling | Log | Tutorials | References |
Contents |
Week 3
16/07
[http://www.glasgow.gov.uk/ Glasgow ]Bank Holiday.
17/07
We were given a brief introduction to [http://www.bionessie.com Bionessie] and [http://sbml.org/ SBML]. Also we be begun to get to grips with Global Sensitivity analysis.
18/07
A brief overview of [http://www.mathworks.com/products/simbiology/ SimBiology] was given to the drylab by Gary. Martina and Rachel continued learning about [http://en.wikipedia.org/wiki/Stochastic_modelling Stochastic Modelling], while the rest of the team were working on Sensitivity Analysis.
19/07
A presentation was given to both, the wetlab and the Drylab, about the Full Text Fetcher programme which, will help to search and retrive research articles. The Stochastic Simulation Algorithm [http://en.wikipedia.org/wiki/Gillespie_algorithm (Gillespie's algorithm)] is yet ready in the code to run some stochastics simulations on the [http://en.wikipedia.org/wiki/Michaelis-Menten Michaelis-Menten] system.
20/07
Today we realized that, we missed few important details in our model 1. All morning was like one big mess. Everybody gave their ideas how things should be sorted. Eventually, we settled our brainstormed ideas on board and decided to leave simulations for Monday because new parameter hunt for model 1.2 was about to begin… Stochastic's work keeps on fitting the [http://en.wikipedia.org/wiki/Fano_factor fano factor!]
| Previous Week | Next Week |
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| Modelling | Log | Tutorials | References |
