Imperial/Wet Lab/Results/Res1.1
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=Optimum Counting Time for the 'Twinkle' Fluorometer= | =Optimum Counting Time for the 'Twinkle' Fluorometer= | ||
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==Aims== | ==Aims== | ||
| - | To determine the optimum counting time for the fluorometer while | + | To determine the optimum counting time for the fluorometer while avoiding photobleaching. |
The counting time is the time the fluorometer detector stays on top of each well. The fluorometer we are using is a [http://www.bertholdtech.com/ww/en/pub/bioanalytik/produkte/lb970.cfm '''Twinkle LB970'''] from [http://www.bertholdtech.com/ww/en/pub/zentral/firma.cfm '''Berthold Technologies''']. | The counting time is the time the fluorometer detector stays on top of each well. The fluorometer we are using is a [http://www.bertholdtech.com/ww/en/pub/bioanalytik/produkte/lb970.cfm '''Twinkle LB970'''] from [http://www.bertholdtech.com/ww/en/pub/zentral/firma.cfm '''Berthold Technologies''']. | ||
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A small window time will only account for very discrete levels of fluorescence. These might include sudden spikes of radiation since fluorescence is not a uniform process. Hence we will get variation between samples of equal expression rates. A larger counting time results in a larger window size and hence a more average reading is taken from each sample smoothing out the variation due to the randomness of fluorescence emission. | A small window time will only account for very discrete levels of fluorescence. These might include sudden spikes of radiation since fluorescence is not a uniform process. Hence we will get variation between samples of equal expression rates. A larger counting time results in a larger window size and hence a more average reading is taken from each sample smoothing out the variation due to the randomness of fluorescence emission. | ||
| - | Care must be taken however because larger counting times will lead to faster | + | Care must be taken however because larger counting times will lead to faster photobleaching. A compromise between the two must therefore be found. |
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==Materials and Methods== | ==Materials and Methods== | ||
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==Results== | ==Results== | ||
| - | [[ Image:IC2007 Experimental Design Phase1 Protocol31Window-experiment.PNG|thumb|500px|left|Fig.1: Variability of Fluorescence | + | [[ Image:IC2007 Experimental Design Phase1 Protocol31Window-experiment.PNG|thumb|500px|left|'''Fig.1: Variability of Fluorescence Measurements Using Different Counting Times''']] |
From Fig.1, the most optimum window length to be used is found to be the 0.60 seconds counting time. The 0.15 secs counting time is, as expected, very random but as the counting times are increased by 0.15 secs at a time, the variability between the repeats decreased. When 0.75 secs counting time was reached, this variability starts to rise again, indicating that the window length had surpassed optimum amount. | From Fig.1, the most optimum window length to be used is found to be the 0.60 seconds counting time. The 0.15 secs counting time is, as expected, very random but as the counting times are increased by 0.15 secs at a time, the variability between the repeats decreased. When 0.75 secs counting time was reached, this variability starts to rise again, indicating that the window length had surpassed optimum amount. | ||
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| + | ==Discussion== | ||
| + | It was noticed that by changing the counting time (window) for which the detector remains on top of each well, the variation between repeated measurements varied. It is thus ideal to have as little variation between repeats as possible while maintaining a relatively low counting time to prevent excessive bleaching of the samples. Therefore a range of the smallest counting times possible (0.15 - 0.75 sec) was examined only. | ||
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| + | For each time point examined, different samples of the same stock solution where measured repeatedly (4 times) at different windows (counting time). The percentage (%) variability between the repeated measurements (4) of the same sample was then calculated for each window. Ideally, since the same sample is measured repeatedly, it is expected that the variability between the repeats to be zero (0). This however does not take into consideration the inherent randomness in fluorescence. | ||
| + | From the results, a 0.60 window would allow the least variability across measurements over a 90 minute period while minimizing photobleaching of fluorescent proteins. | ||
==Conclusion== | ==Conclusion== | ||
* A counting time of 0.60sec would provide the least variability across measurements while minimizing photobleaching of the fluorescent proteins expressed. | * A counting time of 0.60sec would provide the least variability across measurements while minimizing photobleaching of the fluorescent proteins expressed. | ||
Latest revision as of 02:08, 27 October 2007
Optimum Counting Time for the 'Twinkle' Fluorometer
Aims
To determine the optimum counting time for the fluorometer while avoiding photobleaching.
The counting time is the time the fluorometer detector stays on top of each well. The fluorometer we are using is a [http://www.bertholdtech.com/ww/en/pub/bioanalytik/produkte/lb970.cfm Twinkle LB970] from [http://www.bertholdtech.com/ww/en/pub/zentral/firma.cfm Berthold Technologies].
A small window time will only account for very discrete levels of fluorescence. These might include sudden spikes of radiation since fluorescence is not a uniform process. Hence we will get variation between samples of equal expression rates. A larger counting time results in a larger window size and hence a more average reading is taken from each sample smoothing out the variation due to the randomness of fluorescence emission.
Care must be taken however because larger counting times will lead to faster photobleaching. A compromise between the two must therefore be found.
Materials and Methods
Link to the Protocol
Results
From Fig.1, the most optimum window length to be used is found to be the 0.60 seconds counting time. The 0.15 secs counting time is, as expected, very random but as the counting times are increased by 0.15 secs at a time, the variability between the repeats decreased. When 0.75 secs counting time was reached, this variability starts to rise again, indicating that the window length had surpassed optimum amount.
Discussion
It was noticed that by changing the counting time (window) for which the detector remains on top of each well, the variation between repeated measurements varied. It is thus ideal to have as little variation between repeats as possible while maintaining a relatively low counting time to prevent excessive bleaching of the samples. Therefore a range of the smallest counting times possible (0.15 - 0.75 sec) was examined only.
For each time point examined, different samples of the same stock solution where measured repeatedly (4 times) at different windows (counting time). The percentage (%) variability between the repeated measurements (4) of the same sample was then calculated for each window. Ideally, since the same sample is measured repeatedly, it is expected that the variability between the repeats to be zero (0). This however does not take into consideration the inherent randomness in fluorescence.
From the results, a 0.60 window would allow the least variability across measurements over a 90 minute period while minimizing photobleaching of fluorescent proteins.
Conclusion
- A counting time of 0.60sec would provide the least variability across measurements while minimizing photobleaching of the fluorescent proteins expressed.
