Edinburgh/Yoghurt/References
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| - | + | [[Edinburgh/Yoghurt| Introduction]] | [[Edinburgh/Yoghurt/Applications|Applications]] | [[Edinburgh/Yoghurt/Design|Design]] | [[Edinburgh/Yoghurt/Modelling|Modelling]] | [[Edinburgh/Yoghurt/Wet Lab|Wet Lab]] | [[Edinburgh/Yoghurt/Proof of concept|Proof of concept]] | [[Edinburgh/Future| Future Directions]] | [[Edinburgh/Yoghurt/References|References]] | |
| - | [[Edinburgh/Yoghurt| Introduction]] | [[Edinburgh/Yoghurt/Applications|Applications]] | [[Edinburgh/Yoghurt/Design|Design]] | [[Edinburgh/Yoghurt/Modelling|Modelling]] | [[Edinburgh/Yoghurt/Wet Lab|Wet Lab]] | [[Edinburgh/Yoghurt/References|References]] | + | |
---- | ---- | ||
'''Vanilla Flavour''' | '''Vanilla Flavour''' | ||
| - | [http://jb.asm.org/cgi/content/abstract/188/7/2666 Genes and Enzymes Involved in Caffeic Acid Biosynthesis in the Actinomycete Saccharothrix | + | [http://jb.asm.org/cgi/content/abstract/188/7/2666 Genes and Enzymes Involved in Caffeic Acid Biosynthesis in the Actinomycete ''Saccharothrix espanaensis''. Berner M, et al, Journal of Bacteriology 188(7): 2666, (2006)] |
| - | Gowri G, et al, Molecular cloning and expression of alfalfa S-adenosyl-L-methionine: caffeic acid 3-O-methyltransferase, a key enzyme of lignin biosynthesis | + | Gowri G, et al, Molecular cloning and expression of alfalfa S-adenosyl-L-methionine: caffeic acid 3-O-methyltransferase, a key enzyme of lignin biosynthesis. Plant Physiology 97(1):7 (1991) |
| - | Downregulation of Caffeic Acid 3-O-Methyltransferase and Caffeoyl CoA 3-O-Methyltransferase in Transgenic Alfalfa Impacts on Lignin Structure and Implications for the Biosynthesis of G and S Lignin | + | Downregulation of Caffeic Acid 3-O-Methyltransferase and Caffeoyl CoA 3-O-Methyltransferase in Transgenic Alfalfa Impacts on Lignin Structure and Implications for the Biosynthesis of G and S Lignin. Guo D, et al, Plant Cell. January; 13(1): 73 (2001) |
| - | Cloning and Characterization of the Ferulic Acid Catabolic Genes of Sphingomonas paucimobilis SYK-6 | + | Cloning and Characterization of the Ferulic Acid Catabolic Genes of ''Sphingomonas paucimobilis'' SYK-6. E Masai, et al, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 68(9): 4416–4424 (2002) |
| - | Vanillin production using metabolically engineered Escherichia coli under non-growing conditions | + | Vanillin production using metabolically engineered ''Escherichia coli'' under non-growing conditions. P Barghini, et al, Microbial Cell Factories, 6:13 (2007) |
| - | Characterization of a bacterial tyrosine ammonia lyase, a biosynthetic enzyme for the photoactive yellow Protein | + | Characterization of a bacterial tyrosine ammonia lyase, a biosynthetic enzyme for the photoactive yellow Protein. JA Kyndt et al, FEBS Letters 512: 240-244 (2002) |
| - | Vanilla flavour: production by conventional and biotechnological routes | + | Vanilla flavour: production by conventional and biotechnological routes. S Ramachandra Rao & GA Ravishankar, Journal of the Science of Food and Agriculture, 80:289-304 (2000) |
| - | Two O-Methyltransferases Isolated from Flower Petals of Rosa chinensis var. spontanea Involved in Scent Biosynthesis W Shuiqin, et al, Journal of Bioscience and Bioengineering, 96(2): 119-128 (2003) | + | Two O-Methyltransferases Isolated from Flower Petals of ''Rosa chinensis'' var. ''spontanea'' Involved in Scent Biosynthesis. W Shuiqin, et al, Journal of Bioscience and Bioengineering, 96(2): 119-128 (2003) |
| - | Applied biocatalysis for the synthesis of natural flavour compounds – current industrial processes and future prospects | + | Applied biocatalysis for the synthesis of natural flavour compounds – current industrial processes and future prospects. J Schrader, Biotechnology Letters, 26: 463–472 (2004) |
'''Lemon Flavour''' | '''Lemon Flavour''' | ||
| - | Monoterpene biosynthesis in lemon (Citrus limon) cDNA isolation and functional analysis of four monoterpene synthases | + | Monoterpene biosynthesis in lemon (''Citrus limon''): cDNA isolation and functional analysis of four monoterpene synthases. J Lucker, et al, Eur. J. Biochem. 269: 3160–3171 (2002) |
| - | Analysis of Lemon and Bergamot Essential Oils by HPLC with Microbore Columns | + | Analysis of Lemon and Bergamot Essential Oils by HPLC with Microbore Columns. M Benincasa, et al, Chromatographia 30(5/6):271 (1990) |
| - | Citrus fruit flavour and aroma biosynthesis | + | Citrus fruit flavour and aroma biosynthesis. L Sharon-Asa, The Plant Journal, 36:664 (2003) |
'''Strawberry Flavour''' | '''Strawberry Flavour''' | ||
| - | Gain and Loss of Fruit Flavor Compounds Produced by Wild and Cultivated Strawberry Species | + | Gain and Loss of Fruit Flavor Compounds Produced by Wild and Cultivated Strawberry Species. A Aharoni, et al, The Plant Cell, 16: 3110–3131 (2004) |
| - | Identification of the SAAT Gene Involved in Strawberry Flavor Biogenesis by Use of DNA Microarrays | + | Identification of the SAAT Gene Involved in Strawberry Flavor Biogenesis by Use of DNA Microarrays. A Aharoni, et al, The Plant Cell, 12: 647–661, (2000) |
| - | Biosynthesis of Mono- and Sesquiterpenes in Strawberry Fruits and Foliage: 2H Labeling Studies | + | Biosynthesis of Mono- and Sesquiterpenes in Strawberry Fruits and Foliage: 2H Labeling Studies. D Hampel, et al, J. Agric. Food Chem. 54: 1473-1478 (2006) |
'''Colour Production''' | '''Colour Production''' | ||
| - | Metabolic Engineering of Anthocyanin Biosynthesis in Escherichia coli | + | Metabolic Engineering of Anthocyanin Biosynthesis in ''Escherichia coli''. Y Yan, et al, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 71(7): 3617–3623 (2005) |
| - | Diversity of Carotenoid Synthesis Gene Clusters from Environmental Enterobacteriaceae Strains | + | Diversity of Carotenoid Synthesis Gene Clusters from Environmental Enterobacteriaceae Strains. N Sedkova, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 71(12): 8141–8146 (2005) |
| - | Elucidation of the Erwinia uredovora Carotenoid Biosynthetic Pathway by Functional Analysis of Gene Products Expressed in ''Escherichia coli'' | + | Elucidation of the Erwinia uredovora Carotenoid Biosynthetic Pathway by Functional Analysis of Gene Products Expressed in ''Escherichia coli''. N Misawa, et al, JOURNAL OF BACTERIOLOGY, 172(12): 6704-6712 (1990) |
'''Transformation into Lactobacillus''' | '''Transformation into Lactobacillus''' | ||
| - | Optimization of technical conditions for the transformation of ''Lactobacillus acidophilu''s strains by electroporation | + | Optimization of technical conditions for the transformation of ''Lactobacillus acidophilu''s strains by electroporation. YH Kim, et al, Journal of Applied Microbiology, 99: 167–174 (2005) |
'''Lycopene''' | '''Lycopene''' | ||
| - | Lycopene and prostate cancer | + | Lycopene and prostate cancer. Ansari MS & Ansari S, Future Oncology, 1(3):425-30 (2005) |
| - | Role of Antioxidant Lycopene in Cancer and Heart Disease | + | Role of Antioxidant Lycopene in Cancer and Heart Disease. A. Venket Rao, Journal of the American College of Nutrition, 19(5): 563-569 (2000) |
| - | ''' | + | '''Gastrointestinal tract flora''' |
| - | + | Guarner, F. Enteric Flora in health and disease, Digestion 2006; 73, pp 5-12 | |
| - | + | Tannock, W. A Special Fondness for Lactobacilli. Appl Environ Microbiol. 2004 June; 70(6): 3189–3194 | |
| - | + | ||
| + | Alina Guimarães Quintanilha, Bruno Zilberstein, Manoel A A Santos, Denis Pajecki, Eduardo Guimarães Hourneaux Moura, Paulo Roberto Arruda Alves, Fauze Maluf-Filho, Ivan Cecconello. A novel sampling method for the investigation of gut. Microbiota. World J Gastroenterol 2007 August 7; 13(29): 3990-3995 | ||
| + | |||
| + | PUMA2--grid-based high-throughput analysis of genomes and metabolic pathways. Maltsev N, Glass E, Sulakhe D, Rodriguez A, Syed MH, Bompada T, Zhang Y, D'Souza M. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D369-72. | ||
| + | |||
| + | Ganzle MG, Vermeulen N, Vogel RF. Carbohydrate, peptide and lipid metabolism of lactic acid bacteria in sourdough. Food Microbiol. 2007 Apr;24(2):128-38. | ||
| + | |||
| + | National Centre for Biotechnology Information. http://www.ncbi.nlm.nih.gov/ | ||
| + | |||
| + | Pearson Int ed, Silverthorn, 2007, Human Physiology, Ch21 | ||
| + | |||
| + | Pocock – Human physiology, the basis of medicine. 1999 | ||
| + | |||
| + | Guyton, Textbook of medical physiology, 2006 | ||
| + | |||
| + | van Spronsen FJ, van Rijn M, Bekhof J, Koch R, Smit PG. Phenylketonuria: tyrosine supplementation in phenylalanine-restricted diets. Am J Clin Nutr. 2001 Feb;73(2):153-7. | ||
| + | |||
| + | KEGG Metabolic reconstruction maps, http://compbio.mcs.anl.gov/puma2/cgi-bin/met_recon.cgi?pwy_db=kegg | ||
| + | |||
| + | Koyanagi, T., Katayama, T., Suzuki, H. And Kumagai, H. Identification of the LIV-I/LS System as the Third Phenylalanine Transporter in Escherichia coli K-12. Journal of Bacteriology, January 2004, p. 343-350 | ||
| + | |||
| + | Nicoline Vermeulen, Michael G. G nzle, and Rudi F. Vogel. Influence of Peptide Supply and Cosubstrates on Phenylalanine Metabolism of Lactobacillus sanfranciscensis DSM20451T and Lactobacillus plantarum TMW1.468. J. Agric. Food Chem., 54 (11), 3832 -3839, 2006. | ||
| + | |||
| + | Berger V, Larondelle Y, Trouet A, Schneider YJ. Transport mechanisms of the large neutral amino acid L-phenylalanine in the human intestinal epithelial caco-2 cell line. J Nutr. 2000 Nov;130(11):2780-8. | ||
| + | |||
| + | |||
| + | '''Other''' | ||
| - | + | Production of Plant-Specific Flavanones by ''Escherichia coli'' Containing an Artificial Gene Cluster. EI Hwang, et al, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 69(5): 2699–2706 (2003) | |
| - | + | Differential proteome analysis of selected lactic acid bacteria, stress response and database construction. Oliver Drews (2004) | |
| - | + | On the puzzling arrangement of the asymmetric MalT-binding sites in the MalT-dependent promoters. O Danot, & O Raibaud, Proc. Natl. Acad. Sci. USA, 90: 10999-11003 (1993) | |
| - | + | Maltose/Maltodextrin System of ''Escherichia coli'': Transport, Metabolism, and Regulation. W Boos & H Shuman, MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS, 62(1): 204–229 (1998) | |
| - | + | Construction of a combined physical and genetic map of the chromosome of ''Lactobacillus acidophilus'' ATCC 4356 and characterization of the rRNA operons. Youssef G, et al, Microbiology 151: 875–892 (2005) | |
| + | Cloning, Phenotypic Expression, and DNA Sequence of the Gene for Lactacin F, an Antimicrobial Peptide produced by ''Lactobacillus'' spp. PM, Muriana, JOURNAL OF BACTERIOLOGY, 173(5): 1779-1788 (1991) | ||
| + | Analysis of promoter sequences from ''Lactobacillus'' and ''Lactococcus'' and their activity in several ''Lactobacillus'' species. A McCracken, et al, Arch Microbiol, 173 :383–389 (2000) | ||
---- | ---- | ||
| - | [[Edinburgh/Yoghurt| Introduction]] | [[Edinburgh/Yoghurt/Applications|Applications]] | [[Edinburgh/Yoghurt/Design|Design]] | [[Edinburgh/Yoghurt/Modelling|Modelling]] | [[Edinburgh/Yoghurt/Wet Lab|Wet Lab]] | [[Edinburgh/Yoghurt/References|References]] | + | [[Edinburgh/Yoghurt| Introduction]] | [[Edinburgh/Yoghurt/Applications|Applications]] | [[Edinburgh/Yoghurt/Design|Design]] | [[Edinburgh/Yoghurt/Modelling|Modelling]] | [[Edinburgh/Yoghurt/Wet Lab|Wet Lab]] | [[Edinburgh/Yoghurt/Proof of concept|Proof of concept]] | [[Edinburgh/Future| Future Directions]] | [[Edinburgh/Yoghurt/References|References]] |
---- | ---- | ||
Latest revision as of 01:30, 27 October 2007
Introduction | Applications | Design | Modelling | Wet Lab | Proof of concept | Future Directions | References
Vanilla Flavour
[http://jb.asm.org/cgi/content/abstract/188/7/2666 Genes and Enzymes Involved in Caffeic Acid Biosynthesis in the Actinomycete Saccharothrix espanaensis. Berner M, et al, Journal of Bacteriology 188(7): 2666, (2006)]
Gowri G, et al, Molecular cloning and expression of alfalfa S-adenosyl-L-methionine: caffeic acid 3-O-methyltransferase, a key enzyme of lignin biosynthesis. Plant Physiology 97(1):7 (1991)
Downregulation of Caffeic Acid 3-O-Methyltransferase and Caffeoyl CoA 3-O-Methyltransferase in Transgenic Alfalfa Impacts on Lignin Structure and Implications for the Biosynthesis of G and S Lignin. Guo D, et al, Plant Cell. January; 13(1): 73 (2001)
Cloning and Characterization of the Ferulic Acid Catabolic Genes of Sphingomonas paucimobilis SYK-6. E Masai, et al, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 68(9): 4416–4424 (2002)
Vanillin production using metabolically engineered Escherichia coli under non-growing conditions. P Barghini, et al, Microbial Cell Factories, 6:13 (2007)
Characterization of a bacterial tyrosine ammonia lyase, a biosynthetic enzyme for the photoactive yellow Protein. JA Kyndt et al, FEBS Letters 512: 240-244 (2002)
Vanilla flavour: production by conventional and biotechnological routes. S Ramachandra Rao & GA Ravishankar, Journal of the Science of Food and Agriculture, 80:289-304 (2000)
Two O-Methyltransferases Isolated from Flower Petals of Rosa chinensis var. spontanea Involved in Scent Biosynthesis. W Shuiqin, et al, Journal of Bioscience and Bioengineering, 96(2): 119-128 (2003)
Applied biocatalysis for the synthesis of natural flavour compounds – current industrial processes and future prospects. J Schrader, Biotechnology Letters, 26: 463–472 (2004)
Lemon Flavour
Monoterpene biosynthesis in lemon (Citrus limon): cDNA isolation and functional analysis of four monoterpene synthases. J Lucker, et al, Eur. J. Biochem. 269: 3160–3171 (2002)
Analysis of Lemon and Bergamot Essential Oils by HPLC with Microbore Columns. M Benincasa, et al, Chromatographia 30(5/6):271 (1990)
Citrus fruit flavour and aroma biosynthesis. L Sharon-Asa, The Plant Journal, 36:664 (2003)
Strawberry Flavour
Gain and Loss of Fruit Flavor Compounds Produced by Wild and Cultivated Strawberry Species. A Aharoni, et al, The Plant Cell, 16: 3110–3131 (2004)
Identification of the SAAT Gene Involved in Strawberry Flavor Biogenesis by Use of DNA Microarrays. A Aharoni, et al, The Plant Cell, 12: 647–661, (2000)
Biosynthesis of Mono- and Sesquiterpenes in Strawberry Fruits and Foliage: 2H Labeling Studies. D Hampel, et al, J. Agric. Food Chem. 54: 1473-1478 (2006)
Colour Production
Metabolic Engineering of Anthocyanin Biosynthesis in Escherichia coli. Y Yan, et al, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 71(7): 3617–3623 (2005)
Diversity of Carotenoid Synthesis Gene Clusters from Environmental Enterobacteriaceae Strains. N Sedkova, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 71(12): 8141–8146 (2005)
Elucidation of the Erwinia uredovora Carotenoid Biosynthetic Pathway by Functional Analysis of Gene Products Expressed in Escherichia coli. N Misawa, et al, JOURNAL OF BACTERIOLOGY, 172(12): 6704-6712 (1990)
Transformation into Lactobacillus
Optimization of technical conditions for the transformation of Lactobacillus acidophilus strains by electroporation. YH Kim, et al, Journal of Applied Microbiology, 99: 167–174 (2005)
Lycopene
Lycopene and prostate cancer. Ansari MS & Ansari S, Future Oncology, 1(3):425-30 (2005)
Role of Antioxidant Lycopene in Cancer and Heart Disease. A. Venket Rao, Journal of the American College of Nutrition, 19(5): 563-569 (2000)
Gastrointestinal tract flora
Guarner, F. Enteric Flora in health and disease, Digestion 2006; 73, pp 5-12
Tannock, W. A Special Fondness for Lactobacilli. Appl Environ Microbiol. 2004 June; 70(6): 3189–3194
Alina Guimarães Quintanilha, Bruno Zilberstein, Manoel A A Santos, Denis Pajecki, Eduardo Guimarães Hourneaux Moura, Paulo Roberto Arruda Alves, Fauze Maluf-Filho, Ivan Cecconello. A novel sampling method for the investigation of gut. Microbiota. World J Gastroenterol 2007 August 7; 13(29): 3990-3995
PUMA2--grid-based high-throughput analysis of genomes and metabolic pathways. Maltsev N, Glass E, Sulakhe D, Rodriguez A, Syed MH, Bompada T, Zhang Y, D'Souza M. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D369-72.
Ganzle MG, Vermeulen N, Vogel RF. Carbohydrate, peptide and lipid metabolism of lactic acid bacteria in sourdough. Food Microbiol. 2007 Apr;24(2):128-38.
National Centre for Biotechnology Information. http://www.ncbi.nlm.nih.gov/
Pearson Int ed, Silverthorn, 2007, Human Physiology, Ch21
Pocock – Human physiology, the basis of medicine. 1999
Guyton, Textbook of medical physiology, 2006
van Spronsen FJ, van Rijn M, Bekhof J, Koch R, Smit PG. Phenylketonuria: tyrosine supplementation in phenylalanine-restricted diets. Am J Clin Nutr. 2001 Feb;73(2):153-7.
KEGG Metabolic reconstruction maps, http://compbio.mcs.anl.gov/puma2/cgi-bin/met_recon.cgi?pwy_db=kegg
Koyanagi, T., Katayama, T., Suzuki, H. And Kumagai, H. Identification of the LIV-I/LS System as the Third Phenylalanine Transporter in Escherichia coli K-12. Journal of Bacteriology, January 2004, p. 343-350
Nicoline Vermeulen, Michael G. G nzle, and Rudi F. Vogel. Influence of Peptide Supply and Cosubstrates on Phenylalanine Metabolism of Lactobacillus sanfranciscensis DSM20451T and Lactobacillus plantarum TMW1.468. J. Agric. Food Chem., 54 (11), 3832 -3839, 2006.
Berger V, Larondelle Y, Trouet A, Schneider YJ. Transport mechanisms of the large neutral amino acid L-phenylalanine in the human intestinal epithelial caco-2 cell line. J Nutr. 2000 Nov;130(11):2780-8.
Other
Production of Plant-Specific Flavanones by Escherichia coli Containing an Artificial Gene Cluster. EI Hwang, et al, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 69(5): 2699–2706 (2003)
Differential proteome analysis of selected lactic acid bacteria, stress response and database construction. Oliver Drews (2004)
On the puzzling arrangement of the asymmetric MalT-binding sites in the MalT-dependent promoters. O Danot, & O Raibaud, Proc. Natl. Acad. Sci. USA, 90: 10999-11003 (1993)
Maltose/Maltodextrin System of Escherichia coli: Transport, Metabolism, and Regulation. W Boos & H Shuman, MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS, 62(1): 204–229 (1998)
Construction of a combined physical and genetic map of the chromosome of Lactobacillus acidophilus ATCC 4356 and characterization of the rRNA operons. Youssef G, et al, Microbiology 151: 875–892 (2005)
Cloning, Phenotypic Expression, and DNA Sequence of the Gene for Lactacin F, an Antimicrobial Peptide produced by Lactobacillus spp. PM, Muriana, JOURNAL OF BACTERIOLOGY, 173(5): 1779-1788 (1991)
Analysis of promoter sequences from Lactobacillus and Lactococcus and their activity in several Lactobacillus species. A McCracken, et al, Arch Microbiol, 173 :383–389 (2000)
Introduction | Applications | Design | Modelling | Wet Lab | Proof of concept | Future Directions | References
