Imperial/Cell by Date/Testing
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To estimate the properties of our system we looked at the evolution of the Fluorescence with time for experiments where temperature is carefully kept constant. (Figure 1).<br> | To estimate the properties of our system we looked at the evolution of the Fluorescence with time for experiments where temperature is carefully kept constant. (Figure 1).<br> | ||
| - | General Behaviour: <br> | + | '''General Behaviour:''' <br> |
*In all experiment we can observe a linear growth of fluorescence corresponding to a steady rate of protein production. | *In all experiment we can observe a linear growth of fluorescence corresponding to a steady rate of protein production. | ||
*This matches the claims of the manufacturer of the cell-free extract that the extract is optimised so that protein degradation is negligible. <br> | *This matches the claims of the manufacturer of the cell-free extract that the extract is optimised so that protein degradation is negligible. <br> | ||
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[[Image:CBD Isothermal.png|Isothermal Data]] <br clear="all"> | [[Image:CBD Isothermal.png|Isothermal Data]] <br clear="all"> | ||
| - | Operating Range:<br> | + | '''Operating Range:<'''br> |
*Our system seems to 'turn off' at around 4 degrees C.<br> | *Our system seems to 'turn off' at around 4 degrees C.<br> | ||
*At 8 degrees with have minimal expression which then increases to a substantial expression at 37 degrees.<br> | *At 8 degrees with have minimal expression which then increases to a substantial expression at 37 degrees.<br> | ||
| - | Synthesis rate vs Temperature<br> | + | '''Synthesis rate vs Temperature'''<br> |
*Over the range of temperature considered here the rate increases with temperature.<br> | *Over the range of temperature considered here the rate increases with temperature.<br> | ||
*To investigate the relation between synthesis rate and temperature we extracted the rate of synthesis of GFP for each experiment and plotted it against 1/T (Figure 2).<br> | *To investigate the relation between synthesis rate and temperature we extracted the rate of synthesis of GFP for each experiment and plotted it against 1/T (Figure 2).<br> | ||
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[[Image:CBD Arrhenius Plot.PNG|Arrhenius Plot]] <br clear = "all" > | [[Image:CBD Arrhenius Plot.PNG|Arrhenius Plot]] <br clear = "all" > | ||
| - | Other practical considerations: <br> | + | '''Other practical considerations:''' <br> |
*Unfortunetly we have not been able to use a visible reporter and so have no idea whether the construct can in fact produce a visible signal. <br> | *Unfortunetly we have not been able to use a visible reporter and so have no idea whether the construct can in fact produce a visible signal. <br> | ||
*In terms of lifespan we have had major problems with evaporation meaning that the lifespan of our system is limited to a few days. <br> | *In terms of lifespan we have had major problems with evaporation meaning that the lifespan of our system is limited to a few days. <br> | ||
Revision as of 21:02, 26 October 2007
Cell by Date: Testing
Summary
Aims
Results
Investigation properties of system under isothermal scenarios
To estimate the properties of our system we looked at the evolution of the Fluorescence with time for experiments where temperature is carefully kept constant. (Figure 1).
General Behaviour:
- In all experiment we can observe a linear growth of fluorescence corresponding to a steady rate of protein production.
- This matches the claims of the manufacturer of the cell-free extract that the extract is optimised so that protein degradation is negligible.
Operating Range:<br>
- Our system seems to 'turn off' at around 4 degrees C.
- At 8 degrees with have minimal expression which then increases to a substantial expression at 37 degrees.
Synthesis rate vs Temperature
- Over the range of temperature considered here the rate increases with temperature.
- To investigate the relation between synthesis rate and temperature we extracted the rate of synthesis of GFP for each experiment and plotted it against 1/T (Figure 2).
- A strong linear correlation in the log plot supports an arrhenius type dependence on temperature with an activation energy of 1.5kJ/mol.
Other practical considerations:
- Unfortunetly we have not been able to use a visible reporter and so have no idea whether the construct can in fact produce a visible signal.
- In terms of lifespan we have had major problems with evaporation meaning that the lifespan of our system is limited to a few days.
