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Revision as of 14:38, 22 October 2007

• Home
  • Site Map
  • Meet the Team
  • Fun with iGEM
  • IcGEMs@OpenWetware
  • Acknowledgements
• Infector Detector
  • Introduction
  • Specification
  • Design
  • Modelling
  • Implementation
  • Testing/Validation
  • F2620 Comparison
  • Conclusion
• Cell by Date
  • Introduction
  • Specification
  • Design
  • Modelling
  • Implementation
  • Testing/Validation
  • Conclusion
• Cell-Free
  • What is Cell-Free?
  • Cell-Free Vs. Cell
  • Our Contributions
  • Characterisation
  • Applications
• Wet Lab
  • Lab Notebook
  • Protocols & Results
  • DNA Constructs
• Dry Lab
  • Modelling
  • Data Analysis
  • Software

Testing and Discussion

Investigation properties of system under isothermal scenarios

In order to investigate the properties of our system we began by looking at isothermal scenarios in order to determine primarily the activation energy of our sytem following Giannuzzi's work with beef. Again this is useful because as per Taoukis' research for a TTI to function correctly its activation energy needs to be close to the target product. In Figure 1 above we see that under isothermal conditions a steady rate of fluoresence was observed, corresponding to a steady rate of protein production. This rate increase with temperature as per our predictions as protein production is linked to the kinetics of translation and so temperature. We have been able to extract the rate of protein production for range of temperature and made an arrhenius plot to further explore translation kinetics. A strong linear correlation in the log plot seems to suggest that an arrhenius type dependance on temperature seems to fit the translation mechanism. From this we have been able to calculate the activation energy as 1.5kJ/mol.

In addtion to calculating the activation energy through these experiments we have also been able to determine the operating range of our system. Our system seems to 'turn off' at around 4 degrees C. At 8 degrees with have minimal expression which then increases to a substantial expression at 37 degrees. Unfortunetly we have not been able to use a visible reporter and so have no idea whether the construct can in fact produce a visible signal. In terms of lifespan we have had major problems with evaporation.

Investigation System properties under Dynamic Temperature Conditions

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Validation and Conclusion

Property	Value	Achieved ?
Inputs	Isothermal conditions between 0 & 40 C	No
	Dynamic conditions eg. steps & ramps	hmm
Outputs	System should give a visual signal to indicate level of thermal exposure where beef is off	No we were unable to use a visual reporter
Activation Energy	System needs to have an activation Energy 30 +/- 20 kJ/mol	No activation energy of system was calculated to be 1.5kJ/mol
Health Regulations	System must not be living replicating bacteria	Yes through use of cell free chassis
Response Time	System needs to have a response time under 1 hour	hmm tbd
Lifespan	System must have a shelf life of 7 days	No with current packaging methods evaporation meant that our system 'died' after 2 days

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