Glasgow/DryWeek1
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- | !align=center|[ | + | !align=center|[[Image:Uog.jpg]] || [[Glasgow|<font face=georgia color=#3366CC size=4>Back To <br> Glasgow's <br> Main Page</font>]]|| [[Glasgow/Wetlab|<font face=georgia color=#3366CC size=4>Go To <br> Glasgow's <br> Wetlab Log</font>]] |
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- | |[https://2007.igem.org/Glasgow/DryTutorials <font face=georgia color=# | + | |[https://2007.igem.org/Glasgow/Modeling <font face=georgia color=#3366CC size=5><b>Modelling</b></font>] |
+ | |[https://2007.igem.org/Glasgow/DryLog <font face=georgia color=#3366CC size=5><b>Log</b></font>] | ||
+ | |[https://2007.igem.org/Glasgow/DryTutorials <font face=georgia color=#3366CC size=5><b>Tutorials</b></font>] | ||
|[https://2007.igem.org/Glasgow/DryReferences <font face=georgia color=#3366CC size=5><b>References</b></font>] | |[https://2007.igem.org/Glasgow/DryReferences <font face=georgia color=#3366CC size=5><b>References</b></font>] | ||
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== Week 1 == | == Week 1 == | ||
=== 02/07 === | === 02/07 === | ||
- | After a brief re-introduction to the Laboratory and our project proposal, we outlined a [[Glasgow/Phases| | + | After a brief re-introduction to the Laboratory and our project proposal, we outlined a [[Glasgow/Phases| 6-PHASE]] approach to guide our practice over the summer. |
From here the Modellers began working on basic Matlab modelling tutorials, designed by [[User:gux|Xu Gu]], to allow all modellers to reach a satisfactory ability. By the end of the day we had completed a number of [http://en.wikipedia.org/wiki/Law_of_mass_action Mass-action] programs using the ode45 funtion and grasped the translation from basic notaion into [http://en.wikipedia.org/wiki/Substrate_%28biochemistry%29 Substrate], [http://en.wikipedia.org/wiki/Enzyme Enzyme] and S/E-complex notation. | From here the Modellers began working on basic Matlab modelling tutorials, designed by [[User:gux|Xu Gu]], to allow all modellers to reach a satisfactory ability. By the end of the day we had completed a number of [http://en.wikipedia.org/wiki/Law_of_mass_action Mass-action] programs using the ode45 funtion and grasped the translation from basic notaion into [http://en.wikipedia.org/wiki/Substrate_%28biochemistry%29 Substrate], [http://en.wikipedia.org/wiki/Enzyme Enzyme] and S/E-complex notation. | ||
=== 03/07 === | === 03/07 === | ||
- | We developed our modelling techniques by programming responses to basic [http://en.wikipedia.org/wiki/Metabolic_pathway metabolic] and [http://en.wikipedia.org/wiki/Cell_signaling signalling] pathways. We then learnt more precise techniques of modelling, e.g. accuracy and tolerace variance and noting parameters. We then covered | + | We developed our modelling techniques by programming responses to basic [http://en.wikipedia.org/wiki/Metabolic_pathway metabolic] and [http://en.wikipedia.org/wiki/Cell_signaling signalling] pathways. We then learnt more precise techniques of modelling, e.g. accuracy and tolerace variance and noting parameters. We then covered if while and switch functions. |
=== 04/07 === | === 04/07 === | ||
- | We were introduced to the 'Nested Functions' to allow for simpler programming, and the basic ideas behind Sensitivity of output due to a range of possible values of varying constants. | + | We were introduced to the [http://en.wikipedia.org/wiki/Nested_function 'Nested Functions'] to allow for simpler programming, and the basic ideas behind Sensitivity of output due to a range of possible values of varying constants. |
- | In the afternoon, all modellers were shown some Wetlab techniques for the sake of a more thorough understanding of the processes involved. | + | In the afternoon, all modellers were shown some [[Glasgow/Wetlab|Wetlab |
+ | ]] techniques for the sake of a more thorough understanding of the processes involved. | ||
- | Our experiment was to extract plasmids from a number of different bacterial cultures. | + | Our experiment was to extract [http://en.wikipedia.org/wiki/Plasmids plasmids] from a number of different bacterial [[Glasgow/Wetlab/Week1|cultures |
+ | ]]. | ||
=== 05/07 === | === 05/07 === | ||
- | + | The end of week one. Feels like we did no practical work at all. But things are about to heet up... | |
+ | <br> | ||
+ | [[Glasgow/DryWeek2|<font face=georgia color=#3366CC size=4>Next <br> Week</font>]] | ||
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{|cellspacing="6px" cellpadding="16" border="0" width="100%" | {|cellspacing="6px" cellpadding="16" border="0" width="100%" | ||
|- align=center | |- align=center | ||
- | |[https://2007.igem.org/Glasgow/DryTutorials <font face=georgia color=# | + | |[https://2007.igem.org/Glasgow/Modeling <font face=georgia color=#3366CC size=5><b>Modelling</b></font>] |
+ | |[https://2007.igem.org/Glasgow/DryLog <font face=georgia color=#3366CC size=5><b>Log</b></font>] | ||
+ | |[https://2007.igem.org/Glasgow/DryTutorials <font face=georgia color=#3366CC size=5><b>Tutorials</b></font>] | ||
|[https://2007.igem.org/Glasgow/DryReferences <font face=georgia color=#3366CC size=5><b>References</b></font>] | |[https://2007.igem.org/Glasgow/DryReferences <font face=georgia color=#3366CC size=5><b>References</b></font>] | ||
- | + | ||
|} | |} |
Latest revision as of 17:13, 22 October 2007
Back To Glasgow's Main Page | Go To Glasgow's Wetlab Log |
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Modelling | Log | Tutorials | References |
Contents |
Week 1
02/07
After a brief re-introduction to the Laboratory and our project proposal, we outlined a 6-PHASE approach to guide our practice over the summer.
From here the Modellers began working on basic Matlab modelling tutorials, designed by Xu Gu, to allow all modellers to reach a satisfactory ability. By the end of the day we had completed a number of Mass-action programs using the ode45 funtion and grasped the translation from basic notaion into Substrate, Enzyme and S/E-complex notation.
03/07
We developed our modelling techniques by programming responses to basic metabolic and signalling pathways. We then learnt more precise techniques of modelling, e.g. accuracy and tolerace variance and noting parameters. We then covered if while and switch functions.
04/07
We were introduced to the 'Nested Functions' to allow for simpler programming, and the basic ideas behind Sensitivity of output due to a range of possible values of varying constants.
In the afternoon, all modellers were shown some Wetlab techniques for the sake of a more thorough understanding of the processes involved.
Our experiment was to extract plasmids from a number of different bacterial cultures .
05/07
The end of week one. Feels like we did no practical work at all. But things are about to heet up...
Next
Week
Modelling | Log | Tutorials | References |